Phase 0 Classification

Authoritative freeze-and-classify table. Does not move files. Later phases execute actions per row phase column.

Vocabulary: keep (stays in place) · move (path change, same concept) · split (divide across 2+ destinations) · refactor (logic change) · archive (to archive/legacy-cli/<subdir>) · delete (remove outright) · decide-later (open question blocking action).

See 03-reorg-synthesis.md for the target architecture this classification lands into, and phases/phase-0-freeze-and-classify.md for the Phase 0 entry/exit criteria.

Summary counts

action	rows
keep	47
move	118
split	9
refactor	4
archive	83
delete	2
decide-later	13
total	276

src/cli/ core

CLI infrastructure. Most ergonomics keep; runtime.ts gets the critical coupling fix in Phase 2.

path	action	destination	phase	notes
src/cli/index.ts	refactor	src/cli/index.ts	3	Shrink COMMAND_LOADERS to surviving commands
src/cli/runtime.ts	refactor	—	2	Delete setCliRuntime; pass context explicitly
src/cli/hooks.ts	keep	—	—	Commander preAction plumbing
src/cli/colors.ts	keep	—	—	CLI-local ergonomics
src/cli/format.ts	keep	—	—	CLI-local ergonomics
src/cli/output.ts	keep	—	—	CLI-local ergonomics
src/cli/progress.ts	keep	—	—	CLI-local ergonomics
src/cli/ui.ts	keep	—	—	CLI-local ergonomics
src/cli/inquirer.ts	keep	—	—	CLI-local ergonomics
src/cli/template-code.ts	keep	—	—	CLI-local ergonomics
src/cli/paths.ts	keep	—	—	CLI-local ergonomics
src/cli/utils.ts	keep	—	—	CLI-local ergonomics
src/cli/meta.ts	keep	—	—	CLI-local ergonomics

src/cli/commands/ — 43 subcommands

Minimal survivors: doctor, mcp, config, render. Everything else archives to archive/legacy-cli/commands/.

path	action	destination	phase	notes
src/cli/commands/doctor.ts	keep	—	—	Host diagnostic — irreplaceable by harness
src/cli/commands/mcp.ts	keep	—	—	MCP adapter launcher
src/cli/commands/config.ts	keep	—	—	cm config show — debugging aid
src/cli/commands/render.ts	refactor	src/cli/commands/render.ts	3	Wrapper over scripts/harness/render.ts
src/cli/commands/annotate.ts	archive	archive/legacy-cli/commands/	4	Agentic surface — harness skill replaces
src/cli/commands/archetypes.ts	archive	archive/legacy-cli/commands/	4	Registry op — moves to runtime API
src/cli/commands/assets.ts	archive	archive/legacy-cli/commands/	4	Vendor refresh — replaced by flow
src/cli/commands/audio.ts	archive	archive/legacy-cli/commands/	3	Stage-runner — replaced by harness script
src/cli/commands/bench.ts	archive	archive/legacy-cli/commands/	3	Dev-only bench; keep impl, drop command
src/cli/commands/blueprint.ts	archive	archive/legacy-cli/commands/	4	Agentic — becomes skill
src/cli/commands/caption-quality-gate.ts	archive	archive/legacy-cli/commands/	4	Becomes flow gate
src/cli/commands/caption-quality.ts	archive	archive/legacy-cli/commands/	4	Demoted to skill
src/cli/commands/captions.ts	archive	archive/legacy-cli/commands/	3	Stage-runner
src/cli/commands/classify.ts	archive	archive/legacy-cli/commands/	4	Agentic
src/cli/commands/demo.ts	archive	archive/legacy-cli/commands/	4	Marketing artefact
src/cli/commands/evaluate.ts	archive	archive/legacy-cli/commands/	3	Replaced by evaluate-batch flow
src/cli/commands/extract-features.ts	archive	archive/legacy-cli/commands/	4	Becomes skill
src/cli/commands/feedback.ts	archive	archive/legacy-cli/commands/	4	Agentic
src/cli/commands/frame-analyze.ts	archive	archive/legacy-cli/commands/	4	Becomes skill
src/cli/commands/generate.ts	archive	archive/legacy-cli/commands/	3	Replaced by generate-short flow
src/cli/commands/generate-defaults.ts	archive	archive/legacy-cli/commands/	3	Helper for generate.ts
src/cli/commands/generate-output.ts	archive	archive/legacy-cli/commands/	3	Helper
src/cli/commands/generate-preflight.ts	archive	archive/legacy-cli/commands/	3	Helper → preflight-check flow
src/cli/commands/generate-quality.ts	archive	archive/legacy-cli/commands/	3	Helper
src/cli/commands/generate-sync.ts	archive	archive/legacy-cli/commands/	3	Helper
src/cli/commands/hooks.ts	archive	archive/legacy-cli/commands/	3	Content-hook CLI → runtime API
src/cli/commands/import.ts	archive	archive/legacy-cli/commands/	3	Importer CLI wrapper
src/cli/commands/init.ts	archive	archive/legacy-cli/commands/	4	Scaffolding command
src/cli/commands/lab.ts	archive	archive/legacy-cli/commands/	4	Launches src/lab (also archived)
src/cli/commands/media.ts	archive	archive/legacy-cli/commands/	3	Stage-runner
src/cli/commands/package.ts	archive	archive/legacy-cli/commands/	3	Runtime API instead
src/cli/commands/prompts.ts	archive	archive/legacy-cli/commands/	4	Prompt registry CLI
src/cli/commands/publish.ts	archive	archive/legacy-cli/commands/	3	Runtime API instead
src/cli/commands/qa.ts	archive	archive/legacy-cli/commands/	4	Agentic
src/cli/commands/quality-rank.ts	archive	archive/legacy-cli/commands/	4	Becomes skill
src/cli/commands/quality-score.ts	archive	archive/legacy-cli/commands/	4	Becomes skill
src/cli/commands/rate.ts	archive	archive/legacy-cli/commands/	4	Becomes skill
src/cli/commands/research.ts	archive	archive/legacy-cli/commands/	4	Agentic — migrates to skill
src/cli/commands/retrieve.ts	archive	archive/legacy-cli/commands/	4	Replaced by runtime API
src/cli/commands/score.ts	archive	archive/legacy-cli/commands/	4	Becomes skill
src/cli/commands/script.ts	archive	archive/legacy-cli/commands/	3	Stage-runner
src/cli/commands/setup.ts	archive	archive/legacy-cli/commands/	4	Scaffolding
src/cli/commands/telemetry.ts	archive	archive/legacy-cli/commands/	4	Agentic surface
src/cli/commands/templates.ts	archive	archive/legacy-cli/commands/	4	Template CLI → runtime API
src/cli/commands/timestamps.ts	archive	archive/legacy-cli/commands/	3	Stage-runner
src/cli/commands/validate.ts	archive	archive/legacy-cli/commands/	3	Becomes flow + skill
src/cli/commands/videospec.ts	archive	archive/legacy-cli/commands/	4	Becomes skill
src/cli/commands/visuals.ts	archive	archive/legacy-cli/commands/	3	Stage-runner
src/cli/commands/workflows.ts	archive	archive/legacy-cli/commands/	4	Entire workflows system replaced

src/core/

Split across src/infra/ (cross-cutting), src/adapters/ (external bridges), src/runtime/ (deterministic core).

path	action	destination	phase	notes
src/core/config.ts	move+refactor	src/infra/config.ts	2	Drop CLI-global coupling
src/core/logger.ts	move	src/infra/logger.ts	2	Pino wrapper
src/core/errors.ts	move	src/infra/errors.ts	2	CMError type
src/core/retry.ts	move	src/infra/retry.ts	2	Generic retry util
src/core/require.ts	move	src/infra/require.ts	2	Dynamic require shim
src/core/events/	move	src/infra/events/	2	Emitter/observer infra
src/core/pipeline.ts	move	src/runtime/pipeline.ts	2	Runtime pipeline bus
src/core/pipeline.events.ts	move	src/runtime/pipeline.events.ts	2	Event defs
src/core/providers/	move	src/adapters/providers/	2	Provider-wrapping decorators
src/core/llm/	move	src/adapters/llm/	2	openai/anthropic/gemini clients
src/core/doctor/	move	src/infra/doctor/	2	Feeds cm doctor
src/core/assets/	move	src/adapters/asr/whisper-assets/	2	Whisper model mgmt
src/core/video/	move	src/runtime/media/	2	ffmpeg wrapper
src/core/ocr/	move	src/adapters/ocr/	2	Tesseract binding
src/core/text/	move	src/runtime/text/	2	Similarity utils
src/core/embeddings/	move	src/runtime/embeddings/	2	Pure embedder
src/core/retrieval/	move	src/runtime/retrieval/	2	Brute-force retrieval

src/domain/ (implicit contracts barrel)

Phase 1 lift — highest-risk mechanical move.

path	action	destination	phase	notes
src/domain/index.ts	refactor	src/contracts/index.ts	1	Contracts barrel
src/domain/ids.ts	move	src/contracts/ids.ts	1	Stable type
src/domain/doctor.ts	move	src/contracts/doctor.ts	1	Stable type
src/domain/render-templates.ts	move	src/contracts/render-templates.ts	1	Stable type
src/domain/repo-facts.generated.ts	move	src/contracts/generated/	1	Generated — update gen script path
src/domain/ubiquitous-language.generated.ts	move	src/contracts/generated/	1	Generated — update gen script path

src/types/

path	action	destination	phase	notes
src/types/kokoro-js.d.ts	move	src/contracts/ambient/kokoro-js.d.ts	1	Until kokoro-js ships types

src/script/

path	action	destination	phase	notes
src/script/schema.ts	split	src/contracts/script.ts + src/runtime/script/	1	Types vs runtime
src/script/generator.ts	move	src/runtime/script/generator.ts	2	Calls adapter/llm
src/script/blueprint-compliance.ts	move	src/runtime/script/blueprint-compliance.ts	2	Deterministic helper
src/script/sanitize.ts	move	src/runtime/script/sanitize.ts	2	Deterministic helper
src/script/research-context.ts	move	src/runtime/script/research-context.ts	2	Consumer of adapters/research
src/script/prompts/	move	src/prompts/script/	2	Consolidate prompts

src/audio/

Split: runtime deterministic code stays, TTS/ASR providers move to adapters.

path	action	destination	phase	notes
src/audio/pipeline.ts	move	src/runtime/audio/pipeline.ts	2	Runtime entry
src/audio/alignment.ts	move	src/runtime/audio/alignment.ts	2	Deterministic
src/audio/schema.ts	split	src/contracts/audio.ts + src/runtime/audio/	1	—
src/audio/tts/	move	src/adapters/tts/	2	kokoro/elevenlabs clients
src/audio/tts/kokoro.ts	move	src/adapters/tts/kokoro.ts	2	External TTS
src/audio/tts/elevenlabs.ts	move	src/adapters/tts/elevenlabs.ts	2	External TTS
src/audio/tts/text-chunking.ts	move	src/adapters/tts/text-chunking.ts	2	Provider util
src/audio/tts/types.ts	move	src/contracts/tts.ts	1	Type defs
src/audio/tts/index.ts	move	src/adapters/tts/index.ts	2	Barrel
src/audio/asr/whisper-cpp/	move	src/adapters/asr/whisper-cpp/	2	External ASR
src/audio/asr/gemini-asr.ts	move	src/adapters/asr/gemini-asr.ts	2	External ASR
src/audio/asr/elevenlabs-forced-alignment.ts	move	src/adapters/asr/elevenlabs-forced-alignment.ts	2	External
src/audio/asr/post-processor.ts	move	src/runtime/audio/asr/post-processor.ts	2	Deterministic
src/audio/asr/reconcile.ts	move	src/runtime/audio/asr/reconcile.ts	2	Deterministic
src/audio/asr/script-match.ts	move	src/runtime/audio/asr/script-match.ts	2	Deterministic
src/audio/asr/validator.ts	move	src/runtime/audio/asr/validator.ts	2	Deterministic
src/audio/asr/index.ts	move	src/runtime/audio/asr/index.ts	2	Barrel
src/audio/sync/	move	src/runtime/audio/sync/	2	Deterministic
src/audio/mix/	move	src/runtime/audio/mix/	2	Deterministic
src/audio/mix/schema.ts	split	src/contracts/mix.ts + src/runtime/audio/mix/	1	Type lift

src/visuals/

path	action	destination	phase	notes
src/visuals/schema.ts	split	src/contracts/visuals.ts + src/runtime/visuals/	1	—
src/visuals/matcher.ts	move	src/runtime/visuals/matcher.ts	2	Deterministic
src/visuals/duration.ts	move	src/runtime/visuals/duration.ts	2	Deterministic
src/visuals/keywords.ts	move	src/runtime/visuals/keywords.ts	2	Deterministic
src/visuals/evaluation.ts	move	src/runtime/visuals/evaluation.ts	2	Deterministic
src/visuals/observability.ts	move	src/runtime/visuals/observability.ts	2	Deterministic
src/visuals/gameplay.ts	move	src/runtime/visuals/gameplay.ts	2	Deterministic
src/visuals/provider-router.ts	move	src/runtime/visuals/provider-router.ts	2	Deterministic
src/visuals/motion/	move	src/runtime/visuals/motion/	2	Deterministic
src/visuals/providers/pexels*.ts	move	src/adapters/visuals/pexels.ts	2	External API
src/visuals/providers/pixabay*.ts	move	src/adapters/visuals/pixabay.ts	2	External API
src/visuals/providers/nanobanana-provider.ts	move	src/adapters/visuals/nanobanana.ts	2	External
src/visuals/providers/local-provider.ts	move	src/adapters/visuals/local.ts	2	Local fs provider
src/visuals/providers/local-image-provider.ts	move	src/adapters/visuals/local-image.ts	2	Local fs provider
src/visuals/providers/mock-provider.ts	move	src/adapters/visuals/mock.ts	2	Test double
src/visuals/providers/types.ts	move	src/contracts/visuals-provider.ts	1	Type defs
src/visuals/providers/index.ts	move	src/adapters/visuals/index.ts	2	Barrel

src/render/

path	action	destination	phase	notes
src/render/schema.ts	split	src/contracts/render.ts + src/runtime/render/	1	—
src/render/service.ts	move	src/runtime/render/service.ts	2	Render entry
src/render/audio-mix.ts	move	src/runtime/render/audio-mix.ts	2	Runtime
src/render/index.ts	move	src/runtime/render/index.ts	2	Barrel
src/render/template-sdk.ts	move	src/runtime/render/template-sdk.ts	2	Template API
src/render/remotion/	move	src/runtime/render/remotion/	2	Remotion compositions (tsx)
src/render/templates/	move	src/runtime/render/templates/	2	Registry + installer
src/render/captions/	move	src/runtime/render/captions/	2	Caption pipeline
src/render/presets/	move	src/runtime/render/presets/	2	Style presets
src/render/styles/	move	src/runtime/render/styles/	2	—
src/render/themes/	move	src/runtime/render/themes/	2	—
src/render/tokens/	move	src/runtime/render/tokens/	2	Design tokens
src/render/assets/	move	assets/render/	2	Static assets out of src/

src/media/

path	action	destination	phase	notes
src/media/schema.ts	split	src/contracts/media.ts + src/runtime/media/	1	—
src/media/service.ts	move	src/runtime/media/service.ts	2	Runtime
src/media/synthesis/orchestrator.ts	move	src/runtime/media/synthesis/orchestrator.ts	2	Runtime
src/media/synthesis/registry.ts	move	src/runtime/media/synthesis/registry.ts	2	—
src/media/synthesis/types.ts	move	src/contracts/media-synthesis.ts	1	Type defs
src/media/synthesis/google-auth.ts	move	src/adapters/media-synthesis/google-auth.ts	2	External
src/media/synthesis/http.ts	move	src/adapters/media-synthesis/http.ts	2	External HTTP
src/media/synthesis/adapters/	move	src/adapters/media-synthesis/	2	Veo/Nanobanana/DepthFlow

src/videospec/ + src/videointel/

Merge into one location. Two modules doing the same work.

path	action	destination	phase	notes
src/videospec/schema.ts	split	src/contracts/videospec.ts + src/runtime/videospec/	1	V1 namespace
src/videospec/analyze.ts	move	src/runtime/videospec/analyze.ts	2	Merge target
src/videospec/features.ts	move	src/runtime/videospec/features.ts	2	—
src/videospec/cache.ts	move	src/runtime/videospec/cache.ts	2	—
src/videospec/ingest.ts	move	src/runtime/videospec/ingest.ts	2	—
src/videospec/index.ts	move	src/runtime/videospec/index.ts	2	Barrel
src/videointel/schema.ts	split	src/contracts/videospec.ts (merged)	1	Merge into videospec contract
src/videointel/blueprint.ts	move	src/runtime/videospec/blueprint.ts	2	Merge
src/videointel/blueprint-context.ts	move	src/runtime/videospec/blueprint-context.ts	2	Merge
src/videointel/classify.ts	move	src/runtime/videospec/classify.ts	2	Merge
src/videointel/compare.ts	move	src/runtime/videospec/compare.ts	2	Merge
src/videointel/test-fixtures.ts	move	fixtures/videospec/	2	Promote to top-level fixtures
src/videointel/index.ts	delete	—	2	Merge duplicates videospec index

src/validate/

All runtime; Python bridge preserved.

path	action	destination	phase	notes
src/validate/schema.ts	split	src/contracts/validate.ts + src/runtime/validate/	1	—
src/validate/cadence.ts	move	src/runtime/validate/cadence.ts	2	Deterministic
src/validate/ffprobe.ts	move	src/runtime/validate/ffprobe.ts	2	Deterministic
src/validate/ffprobe-audio.ts	move	src/runtime/validate/ffprobe-audio.ts	2	Deterministic
src/validate/flow-consistency.ts	move	src/runtime/validate/flow-consistency.ts	2	—
src/validate/frame-bounds.ts	move	src/runtime/validate/frame-bounds.ts	2	—
src/validate/freeze.ts	move	src/runtime/validate/freeze.ts	2	—
src/validate/gates.ts	move	src/runtime/validate/gates.ts	2	Flow gate impls
src/validate/profiles.ts	move	src/runtime/validate/profiles.ts	2	—
src/validate/python-json.ts	move	src/runtime/validate/python-json.ts	2	Python bridge
src/validate/python-probe.ts	move	src/runtime/validate/python-probe.ts	2	Update script path
src/validate/quality.ts	move	src/runtime/validate/quality.ts	2	—
src/validate/safety.ts	move	src/runtime/validate/safety.ts	2	—
src/validate/scene-detect.ts	move	src/runtime/validate/scene-detect.ts	2	Python bridge
src/validate/temporal.ts	move	src/runtime/validate/temporal.ts	2	—
src/validate/validate.ts	move	src/runtime/validate/validate.ts	2	—
src/validate/video-info.ts	move	src/runtime/validate/video-info.ts	2	—
src/validate/audio-signal.ts	move	src/runtime/validate/audio-signal.ts	2	—
src/validate/content-type.ts	move	src/runtime/validate/content-type.ts	2	—

src/score/ and src/quality-score/

path	action	destination	phase	notes
src/score/schema.ts	split	src/contracts/score.ts + src/runtime/score/	1	—
src/score/sync-schema.ts	move	src/contracts/sync.ts	1	Sync type defs
src/score/ (remaining ~19 scorers)	move	src/runtime/score/	2	DNSMOS, image/video reward, engagement, pacing, semantic, sync
src/quality-score/feature-schema.ts	move	src/contracts/quality-score.ts	1	Type defs
src/quality-score/label-schema.ts	move	src/contracts/quality-score.ts	1	Type defs
src/quality-score/feature-extractor.ts	move	src/runtime/score/ml/feature-extractor.ts	2	—
src/quality-score/scorer.ts	move	src/runtime/score/ml/scorer.ts	2	—
src/quality-score/index.ts	move	src/runtime/score/ml/index.ts	2	Barrel

src/evaluate/

path	action	destination	phase	notes
src/evaluate/schema.ts	split	src/contracts/evaluate.ts + src/runtime/evaluate/	1	—
src/evaluate/preference-schema.ts	move	src/contracts/preference.ts	1	Type defs
src/evaluate/active-learning.ts	move	src/runtime/evaluate/active-learning.ts	2	—
src/evaluate/batch.ts	archive	archive/legacy-cli/evaluate-batch/	3	Replaced by evaluate-batch flow
src/evaluate/calibrator.ts	move	src/runtime/evaluate/calibrator.ts	2	—
src/evaluate/compare.ts	move	src/runtime/evaluate/compare.ts	2	—
src/evaluate/diversity.ts	move	src/runtime/evaluate/diversity.ts	2	—
src/evaluate/evaluator.ts	move	src/runtime/evaluate/evaluator.ts	2	Per-item scorer (keep)
src/evaluate/index.ts	move	src/runtime/evaluate/index.ts	2	Barrel

src/research/ — SPLIT

Orchestrator archives (replaced by skill); adapters move.

path	action	destination	phase	notes
src/research/schema.ts	move	src/contracts/research.ts	1	Type defs
src/research/orchestrator.ts	archive	archive/legacy-cli/research/	4	Replaced by research skill
src/research/indexer.ts	archive	archive/legacy-cli/research/	4	Replaced by skill
src/research/index.ts	archive	archive/legacy-cli/research/	4	Barrel for archived surface
src/research/tools/hackernews.ts	move	src/adapters/research/hackernews.ts	2	External API
src/research/tools/reddit.ts	move	src/adapters/research/reddit.ts	2	External API
src/research/tools/tavily.ts	move	src/adapters/research/tavily.ts	2	External API
src/research/tools/web-search.ts	move	src/adapters/research/web-search.ts	2	External API
src/research/tools/base-tool.ts	move	src/adapters/research/base-tool.ts	2	Shared base
src/research/tools/types.ts	move	src/contracts/research-tool.ts	1	Type defs
src/research/tools/index.ts	move	src/adapters/research/index.ts	2	Barrel

src/feedback/, src/policy/

path	action	destination	phase	notes
src/feedback/schema.ts	move	src/contracts/feedback.ts	1	Type defs
src/feedback/store.ts	move	src/runtime/feedback/store.ts	2	JSONL store
src/policy/schema.ts	move	src/contracts/policy.ts	1	Type defs

src/hooks/ — content-hook openers (not git hooks)

path	action	destination	phase	notes
src/hooks/schema.ts	move	src/contracts/openers.ts	1	Rename to avoid "hooks" overload
src/hooks/constants.ts	move	src/runtime/openers/constants.ts	2	—
src/hooks/download.ts	move	src/runtime/openers/download.ts	2	—
src/hooks/resolve.ts	move	src/runtime/openers/resolve.ts	2	—
src/hooks/libraries/	move	src/runtime/openers/libraries/	2	—
src/hooks/index.ts	move	src/runtime/openers/index.ts	2	Barrel

src/archetypes/

path	action	destination	phase	notes
src/archetypes/schema.ts	move	src/contracts/archetypes.ts	1	Type defs
src/archetypes/types.ts	move	src/contracts/archetypes-types.ts	1	Type defs
src/archetypes/registry.ts	move	src/runtime/archetypes/registry.ts	2	—
src/archetypes/installer.ts	move	src/runtime/archetypes/installer.ts	2	—
src/archetypes/dev.ts	move	src/runtime/archetypes/dev.ts	2	—

src/workflows/ — ALL ARCHIVE

Replaced by prompt-language flows. Single biggest deletion in the plan.

path	action	destination	phase	notes
src/workflows/schema.ts	archive	archive/legacy-cli/workflows/	4	Duplicate orchestration
src/workflows/runner.ts	archive	archive/legacy-cli/workflows/	4	Reimplements spawn+timeout
src/workflows/registry.ts	archive	archive/legacy-cli/workflows/	4	—
src/workflows/resolve.ts	archive	archive/legacy-cli/workflows/	4	—
src/workflows/installer.ts	archive	archive/legacy-cli/workflows/	4	—
src/workflows/dev.ts	archive	archive/legacy-cli/workflows/	4	—

src/prompts/, src/importers/, src/package/, src/publish/, src/bench/, src/analysis/

path	action	destination	phase	notes
src/prompts/types.ts	move	src/contracts/prompts.ts	1	Type defs
src/prompts/registry.ts	move	src/prompts/registry.ts	2	Consolidate at top-level src/prompts/
src/prompts/index.ts	move	src/prompts/index.ts	2	Barrel
src/prompts/sources/	move	src/prompts/sources/	2	Keep
src/prompts/templates/	move	src/prompts/templates/	2	Keep
src/prompts/README.md	keep	—	—	Docs
src/importers/timestamps.ts	move	src/runtime/importers/timestamps.ts	2	Thin adapter
src/importers/visuals.ts	move	src/runtime/importers/visuals.ts	2	Thin adapter
src/package/schema.ts	move	src/contracts/package.ts	1	Type defs
src/package/generator.ts	move	src/runtime/package/generator.ts	2	—
src/publish/schema.ts	move	src/contracts/publish.ts	1	Type defs
src/publish/generator.ts	move	src/runtime/publish/generator.ts	2	—
src/bench/types.ts	move	src/contracts/bench.ts	1	Type defs
src/bench/ffmpeg.ts	move	scripts/harness/bench/ffmpeg.ts	3	Demote to harness script
src/bench/generate.ts	move	scripts/harness/bench/generate.ts	3	Demote
src/bench/recipes.ts	move	scripts/harness/bench/recipes.ts	3	Demote
src/bench/run.ts	move	scripts/harness/bench/run.ts	3	Demote
src/bench/stats.ts	move	scripts/harness/bench/stats.ts	3	Demote
src/analysis/frame-analysis.ts	move	src/runtime/analysis/frame-analysis.ts	2	Single-file util

src/server/mcp/ — becomes src/adapters/mcp/

path	action	destination	phase	notes
src/server/mcp/server.ts	move	src/adapters/mcp/server.ts	2	MCP is an adapter
src/server/mcp/tools.ts	move	src/adapters/mcp/tools.ts	2	Tool exposure
src/server/mcp/session-store.ts	move+refactor	src/adapters/mcp/session-store.ts	2	Drop CLI coupling
src/server/mcp/fastmcp.ts	move	src/adapters/mcp/fastmcp.ts	2	—
src/server/mcp/index.ts	move	src/adapters/mcp/index.ts	2	Barrel + launchable entry

src/lab/ — ALL ARCHIVE

10-file HTTP review UI. Replaced by publish-prep-review skill in Phase 4.

path	action	destination	phase	notes
src/lab/server/	archive	archive/legacy-cli/lab/	4	HTTP server
src/lab/session/	archive	archive/legacy-cli/lab/	4	Session mgmt
src/lab/stores/	archive	archive/legacy-cli/lab/	4	Experiments store
src/lab/services/	archive	archive/legacy-cli/lab/	4	Services
src/lab/security/	archive	archive/legacy-cli/lab/	4	Security middleware
src/lab/metrics/	archive	archive/legacy-cli/lab/	4	Metrics
src/lab/feedback/	archive	archive/legacy-cli/lab/	4	Feedback subsystem
src/lab/schema/	archive	archive/legacy-cli/lab/	4	Lab-specific schema
src/lab/paths.ts	archive	archive/legacy-cli/lab/	4	—

src/demo/, src/test/, src/index.ts

path	action	destination	phase	notes
src/demo/runner.ts	archive	archive/legacy-cli/demo/	4	Marketing artefact
src/test/stubs/	keep	—	—	FakeLLMProvider etc.
src/test/fixtures/	move	fixtures/	2	Promote to top-level
src/index.ts	refactor	src/index.ts	6	Re-scope exports to contracts+runtime

connectors/, registry/

path	action	destination	phase	notes
connectors/mcp-reddit/	keep	—	—	Vendored third-party; add VENDORED.md in Phase 2
registry/repo-facts.yaml	keep	—	—	Canonical source
registry/ubiquitous-language.yaml	keep	—	—	Canonical source

templates/ (top-level) — ALL ARCHIVE

Third-party reference repos nothing imports.

path	action	destination	phase	notes
templates/Short-Video-Creator/	archive	archive/legacy-cli/templates/	4	Python reference project
templates/template-audiogram/	archive	archive/legacy-cli/templates/	4	Remotion template reference
templates/template-overlay/	archive	archive/legacy-cli/templates/	4	Remotion template reference
templates/template-tiktok-base/	archive	archive/legacy-cli/templates/	4	Remotion template reference
templates/vidosy/	archive	archive/legacy-cli/templates/	4	External tool reference

scripts/ — reorganise

Python runtime dependencies (19 files) → scripts/python/

path	action	destination	phase	notes
scripts/audio_quality.py	move	scripts/python/audio_quality.py	3	Runtime dep (via python-probe)
scripts/clip_embeddings.py	move	scripts/python/clip_embeddings.py	3	Runtime dep
scripts/dnsmos_score.py	move	scripts/python/dnsmos_score.py	3	Runtime dep
scripts/flow_warp_error.py	move	scripts/python/flow_warp_error.py	3	Runtime dep
scripts/freeze_detect.py	move	scripts/python/freeze_detect.py	3	Runtime dep
scripts/image_reward.py	move	scripts/python/image_reward.py	3	Runtime dep
scripts/intern_video.py	move	scripts/python/intern_video.py	3	Runtime dep
scripts/onnx_inference.py	move	scripts/python/onnx_inference.py	3	Runtime dep
scripts/preference_server.py	move	scripts/python/preference_server.py	3	Preference loop server
scripts/safety_check.py	move	scripts/python/safety_check.py	3	Runtime dep
scripts/scene_detect.py	move	scripts/python/scene_detect.py	3	Runtime dep
scripts/semantic_similarity.py	move	scripts/python/semantic_similarity.py	3	Runtime dep
scripts/temporal_quality.py	move	scripts/python/temporal_quality.py	3	Runtime dep
scripts/text_embeddings.py	move	scripts/python/text_embeddings.py	3	Runtime dep
scripts/train_calibrator.py	move	scripts/python/train_calibrator.py	3	ML training
scripts/train_quality_scorer.py	move	scripts/python/train_quality_scorer.py	3	ML training
scripts/video_info.py	move	scripts/python/video_info.py	3	Runtime dep
scripts/video_quality.py	move	scripts/python/video_quality.py	3	Runtime dep
scripts/video_reward.py	move	scripts/python/video_reward.py	3	Runtime dep

Code-gen → scripts/gen/ · Ops → scripts/ops/ · Dev → scripts/dev/ · Quality → scripts/quality/

path	action	destination	phase	notes
scripts/gen-cspell.mjs	move	scripts/gen/gen-cspell.mjs	3	Regen spellcheck
scripts/gen-glossary.mjs	move	scripts/gen/gen-glossary.mjs	3	Regen glossary
scripts/gen-repo-facts.mjs	move	scripts/gen/gen-repo-facts.mjs	3	Regen repo facts
scripts/gen-ubiquitous-language-ts.mjs	move	scripts/gen/gen-ubiquitous-language-ts.mjs	3	Regen lang barrel
scripts/lib/	move	scripts/gen/lib/	3	Shared by gen scripts
scripts/postinstall.mjs	move	scripts/ops/postinstall.mjs	3	npm postinstall
scripts/install-whisper.ts	move	scripts/ops/install-whisper.ts	3	Whisper model installer
scripts/sync-hooks.ts	move	scripts/ops/sync-hooks.ts	3	Husky/git sync
scripts/vendor.ps1	move	scripts/ops/vendor.ps1	3	Vendor refresh (Win)
scripts/vendor.sh	move	scripts/ops/vendor.sh	3	Vendor refresh (nix)
scripts/download-gameplay.ps1	move	scripts/ops/download-gameplay.ps1	3	Gameplay assets
scripts/download-gameplay.sh	move	scripts/ops/download-gameplay.sh	3	Gameplay assets
scripts/make-demo-gif.sh	move	scripts/ops/make-demo-gif.sh	3	Demo asset builder
scripts/generate-gameplay-placeholder.sh	move	scripts/ops/generate-gameplay-placeholder.sh	3	Fallback gen
scripts/debug-hook.ts	move	scripts/dev/debug-hook.ts	3	Author debug
scripts/debug-timestamps.ts	move	scripts/dev/debug-timestamps.ts	3	Author debug
scripts/test-angles.ts	move	scripts/dev/test-angles.ts	3	One-off
scripts/phoenix-loop-caption-sweep.ts	archive	archive/legacy-cli/scripts/	4	Replaced by caption-sweep flow
scripts/render-caption-demo.ts	move	scripts/dev/render-caption-demo.ts	3	Author demo
scripts/trace-spawn.cjs	move	scripts/dev/trace-spawn.cjs	3	Trace util
scripts/review-latest.mjs	move	scripts/dev/review-latest.mjs	3	Author aid
scripts/qa/extract-screenshots.mjs	move	scripts/dev/extract-screenshots.mjs	3	QA aid
scripts/test/ (smoke tests *.ts)	move	scripts/dev/smoke/	3	Rename: smoke harnesses, not unit tests
scripts/quality/	keep	—	—	Unchanged
scripts/run-vitest.mjs	move	scripts/quality/run-vitest.mjs	3	Test runner
scripts/vitest/coverage-provider.mjs	move	scripts/quality/coverage-provider.mjs	3	Vitest shim

examples/, experiments/, evals/, evaluations/

path	action	destination	phase	notes
examples/complex-plane-rotation/	move	fixtures/examples/complex-plane-rotation/	2	Promote to top-level fixtures
experiments/complex-plane-rotation/	archive	archive/legacy-cli/experiments/	4	Duplicate of examples — confirm no uniques first
evals/configs/	keep	—	—	Promptfoo configs
evals/rubrics/	keep	—	—	Eval rubrics
evals/datasets/	keep	—	—	Datasets
evals/results/	keep	—	—	Captured eval runs
evals/README.md	keep	—	—	Docs
evaluations/*.json (10 files)	decide-later	—	0	Golden fixture or captured run? resolve collectively

Default if unresolved in Phase 0: move to output/evaluations/ (gitignored) if captured runs; to fixtures/showcase/ if referenced by tests.

tasks/ — ARCHIVE

Pre-beads file-based tracker. AGENTS.md says use beads now.

path	action	destination	phase	notes
tasks/todo/	archive	archive/legacy-cli/tasks/	4	Superseded by beads
tasks/in_progress/	archive	archive/legacy-cli/tasks/	4	Superseded
tasks/done/	archive	archive/legacy-cli/tasks/	4	Superseded
tasks/blocked/	archive	archive/legacy-cli/tasks/	4	Superseded
tasks/templates/	archive	archive/legacy-cli/tasks/	4	Superseded

test-fixtures/, test-e2e-output/, tests/, vendor/, assets/, config/

path	action	destination	phase	notes
test-fixtures/	move	fixtures/	2	Promote + merge with src/test/fixtures/
test-e2e-output/	decide-later	—	0	Likely captured output — should be gitignored?
tests/	keep	—	—	Integration tests
vendor/	keep	—	—	Vendored binaries/datasets
assets/	keep	—	—	Fonts, archetypes, templates, lab, demo
config/cspell/	keep	—	—	Build-time data

Root config files

path	action	destination	phase	notes
package.json	refactor	—	6	Update description + files field in Phase 6
tsconfig*.json	keep	—	—	TS config
eslint.config.js	keep	—	—	Lint config
vitest.config.ts	keep	—	—	Test config
stryker.conf.json	keep	—	—	Mutation testing
.husky/	keep	—	—	Git hooks
.github/	delete	—	—	GitHub automation removed for local-first work
.prompt-language/	keep	—	—	prompt-language state dir
README.md	refactor	—	6	Phase 6 rewrites harness-first
CHANGELOG.md	keep	—	—	Release history
DIRECTION.md	keep	—	—	Living doc
CLAUDE.md, AGENTS.md	keep	—	—	Harness docs

Decide-later register

Every decide-later row above needs resolution before its phase acts. Summary:

row	question	blocker for
evaluations/*.json (10)	captured runs or golden fixtures?	Phase 0 close
test-e2e-output/	should this be gitignored?	Phase 0 close
experiments/videointel-*	any unique logic vs src/videointel/?	Phase 4 archive
src/lab/	real users relying on review UI?	Phase 4 archive
docs/research/	publish in npm tarball?	.npmignore policy
docs/direction/	publish in npm tarball?	.npmignore policy
MCP server	does content-machine continue shipping one?	Phase 2 adapter scope

Not moved

This document classifies only. Phases 1–4 execute moves per the schedule in 03-reorg-synthesis.md and the beads epic content-machine-7tf.