torchtree-tensorflow

torchtree-tensorflow is a package that enhances the functionalities of torchtree by incorporating additional features from tensorflow.

Dependencies

• torchtree
• tensorflow

Installation

Installing from source

git clone https://github.com/4ment/torchtree-scipy
pip install torchtree-scipy/

Features

Discrete gamma site model

This model implements the discretized gamma distribution to model rate heterogeity accross sites. The gradient of this model with respect to the shape parameter is calculated with automatic differentiation. In order to use this model the type of the site model must be changed to torchtree_scipy.GammaSiteModel in the JSON configuration file.

License

Distributed under the GPLv3 License. See LICENSE for more information.

Acknowledgements

torchtree-scipy makes use of the following libraries and tools, which are under their own respective licenses:

• PyTorch
• tensorflow
• torchtree