controlfreec-tsv.md

November 1, 2019 ยท View on GitHub

http://boevalab.inf.ethz.ch/FREEC/tutorial.html#OUTPUT

     1	tumor:	tumor biospecimen ID
     2	chr:	chromosome
     3	start:	start position
     4	end:	end position
     5	copy number:	predicted copy number
     6	status:	type of alteration
     7	genotype:	genotype
     8	uncertainty:	percentage of uncertainty of the predicted genotype
     9	WilcoxonRankSumTestPvalue: P value from Wilcoxon test
    10	KolmogorovSmirnovPvalue: P value from Kolmogorov-Smirnov test