README.txt

Author: Brian Nadel

The data and scripts here represent the

Contents are as follows

Application: As detailed in the GEDIT paper, we have applied GEDIT to tissue samples taken in vivo in 3 contexts. These are a) the GTEX database b) the mouse body atlas and c) a set of skin samples from humans with various skin diseases

GEDITv1.6: This contains a previous version of GEDIT, which runs preprocessing steps in python and the final linear regression in R

GEDITv2.1 This most recent version of GEDIT is streamlined to be run entirely in python2

ReferenceMatrices: We have obtained or assembled 11 references matrices that are saved here and available for use by other parties