Introduction to Bioinformatics
June 12, 2025 · View on GitHub
In this training course you will find theory and practice material for introducing yourself to the basics of high throughput sequencing data analysis.
The material includes slides with theory concepts and a bunch of practical exercises using nextflow and singularity, focusing on the interpretation of results.
Slides
Programm
- Course Programm Download pdf
Set up
- VM Access Open file
- Install software and download dataset First steps
Day 1
- Talk 1: Secuenciación masiva. Plataformas de secuenciación
- Talk 2: Iniciación al entorno Linux. Aspectos teóricos
- Exercise 1: Comandos básicos de linux. -- Download pdf
Day 2
- Talk 3: Aplicaciones de las técnicas de secuenciación masiva (NGS)
- Exercise 2: Conda. -- Download pdf
- Exercise 3: Ficheros. -- Download pdf
- Exercise 4: Permisos. -- Download pdf
Day 3
- Talk 4: Control de calidad y preprocesado
- Talk 5: Mapping y filtrado de duplicados
- Exercise 5: Formato fastq -- Download pdf
- Exercise 6: Control de Calidad y preprocesamiento de ficheros fastq -- Download pdf
- Exercise 7: Mapado y control de calidad -- Download pdf
Day 4
- Talk 6: Variant Calling
- Exercise 8: Variant Calling -- Download pdf
Day 5
- Talk 7: Ensamblado, anotación y tipificación
- Exercise 9: Ensamblado, anotación y tipificación -- Download pdf