README.md
March 13, 2023 ยท View on GitHub
This repository contains the code for releasing proteinshake datasets. It also computes the random, sequence, and structure splits.
To release, install proteinshake, foldseek, and cd-hit:
- https://github.com/BorgwardtLab/proteinshake
- https://github.com/steineggerlab/foldseek
- https://github.com/weizhongli/cdhit
Adjust the TAG, SCRATCH, DESTINATION, NJOBS variables in release.py according to your system.
Then run: python release.py
Note that this repository is licensed under GPLv3, due to dependency licenses.