Third Party Software Manifest

August 14, 2025 ยท View on GitHub

  • GNU Parallel
    • Artifacts: parallel
    • Requires: system Perl
    • Purpose: parallelization
    • License: GPL v3
  • SHOGUN version 1.1.0 (2.1+ is not compatible)
    • Artifacts: shogun (cmdline_static)
    • Provided architectures: linux/x86_64, linux/aarch64, apple/universal (*arm64 + intel)
    • Purpose: executes the SVM decision phase.
    • License: GPL v3
  • SAM version 3.5
    • Artifacts: align2model, hmmscore, modelfromalign
    • Provided architectures: linux/x86_64, linux/aarch64, apple/universal (arm64 + intel)
    • Purpose: build HMM profiles, score sequences for evaluation
    • License: Custom academic/government, not-for-profit, redistributed with permission
  • Minor modifications to allow compilation of the legacy software.