singscore

January 8, 2018 ยท View on GitHub

========= singscore

A Python implementation of Foroutan et al (doi:10.1101/231217) simple sample scoring method for gene-set enrichment analysis

A package of functions that can be used to implement singscore.

Future features will include interactivity in plots and plotting of a
landscape of scores.

Author: Kristy Horan

Brief Description: This collection of methods will take a gene set or signature and a single sample (although multiple samples are also acceptable) and return a score reflective of the gene-set or signature enrichment for that single sample.

An example workflow can be seen on the singscore wiki <https://github .com/kristyhoran/singscore/wiki>_

Or an example script with example input and output are also supplied in https://github.com/kristyhoran/singscore/tree/master/singscore/test