OM_Repositories.md

June 21, 2026 ยท View on GitHub

Project
Description
Resources
Alfred Sikking's Microscopy Knowledge DatabaseRepository for knowledge around microscopy optics.Website
Awesome Biological Image AnalysisA curated list of software, tools and other resources for biological image analysis.Website
AWS open dataLarge open data sharing.Website
BossDBVolumetric database for 3D/4D neuroscience data.Website
Broad Institute BioImage collectionAnnotated biologial images for testing and validation.Website
DYRADRecommended by PLOS, Springer Nature for data sharingWebsite
EBI BioImage ArchiveA BioImage archive developed in collaboration with Euro-BioIMaging and Elixir.Website
EBI EMPIARElectron microscopy Public Image Archive.Website
FigshareCloud solutions for publishers.Website
FocalPlaneMicroscopy community site hosted by the Journal of Cell Science (JCS) and encompassing all fields in the biological sciences related to microscopy.Website Twitter
GBIFRecommed by PLOS, Springer Nature providing Free and open access to biodiversity data.Website
GitHubRepository for code, development platform.Website
GitLabRepository for code, development platform.Website
Image Data Resource (IDR)A public repository of image datasets from published scientific studies, where the community can submit, search and access high-quality bio-image data.Website
Objective Lens IntroductionAll the facts about objective lenses in one pageWebsite
OpenOrganelleJanelia's cells and tissues archive.Website
Open Science Framework (OSF)Repository to share research data, code and documentation; gives DOI and supports embargo periods, etc.; Integrations include GitHub.Website
Open Source Hardware Channel (PLoS One)Currated List for Open Hardware projects in science (Tom Baden et al.).PLoS One
Protocols.ioA secure platform for developing and sharing reproducible methods.Website
Wikimedia CommonsCategory:Light microscopy micrographs.Website
ZenodoMost popular data sharing platform, integration with Github.Website