README.txt

April 20, 2025 · View on GitHub

Installation of PlanarFold (on Linux)

  1. Install Miniconda（if not installed）： wgethttps://repo.anaconda.com/miniconda/Miniconda3−latest−Linux−x8664.shwget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh bash Miniconda3-latest-Linux-x86_64.sh

  2. Create and activate conda environment：(this step might take a while) condaenvcreate−fenvironment.ymlconda env create -f environment.yml conda activate planarfold

  3. Compile the software： cdPlanarFold/srccd PlanarFold/src chmod +x build.sh $ ./build.sh

  4. Execute the software： cdPlanarFold/toolscd PlanarFold/tools ./PlanarFold -h

  5. Set up environment: For bash, add the following lines into the "~/.bashrc" file ''''

PlanarFold

PATH=PATH:/xxxx/PlanarFold/toolsexportPYTHONPATH=PATH:/xxxx/PlanarFold/tools export PYTHONPATH=PYTHONPATH:/xxxx/PlanarFold/src '''' The 'xxxx' is the directory of PlanarFold

For csh, add the following lines into the "~/.cshcr" file ''''

PlanarFold

setenv PYTHONPATH /xxxx/PlanarFold/src setenv PATH ${PATH}:/xxxx/drfold_final_TR/PlanarFold/tools '''' The 'xxxx' is the directory of PlanarFold