Kits

Disclaimer: We are not the host of the data. Please make sure to read the requirements and usage policies of the data and give credit to the authors of the dataset!

Please read the information from the homepage carefully and follow the rules and instructions provided by the original authors when using the data.

• Homepage: https://kits19.grand-challenge.org/data/

Setup

0. Follow the installation instructions of nnDetection and create a data directory name Task011_Kits.
1. Follow the instructions and usage policies to download the data and place all the folders which contain the data and labels for each case into Task011_Kits / raw
2. Run python prepare.py in projects / Task011_Kits / scripts of the nnDetection repository.
3. Remove cases 15, 37, 23, 68, 125, 133 (taken from nnU-Net paper)
4. Download labels from here and replace labelsTr in the splitted folder with the downloaded ones.

The data is now converted to the correct format and the instructions from the nnDetection README can be used to train the networks.