📊 Data & Downloads

December 13, 2025 · View on GitHub

📁 Repository layout

AISAR/
├─ docs/           # Documentation  (Quick Start, Scripts, Data)
├─ scripts/        # core analysis scripts
├─ 2KOB/           # data and AFsample models for 2KOB
├─ CDK2AP1/        # data and AFsample models for CDK2AP1
└─ GLuc/           # data and AFsample models for GLuc

📥 Download pre-calculated AFsample models

2KOB: https://zenodo.org/records/17917670
Unzip into: 2KOB/data_runs/ESmodels/
CDK2AP1: https://zenodo.org/records/15015917
Unzip into: CDK2AP1/data_runs/ESmodels/
GLuc: https://zenodo.org/records/17917708
Unzip into: GLuc/data_runs/ESmodels/

🗂️ Archived DoubleRecall Notebooks

Four DoubleRecall notebooks for the relevant figures and tables are archived in:

doubleRecall/   (CDK2AP1 and GLuc)

📈 Figures & Tables

All files and R scripts used to generate the figures and tables in the paper are archived in:

figs_tables/    (CDK2AP1 and GLuc)
figs/           (2KOB)

This directory includes:

R scripts for generating each figure
Data files used for plotting
Processed results (scores.all, CSV, ...) used in the analysis

To reproduce the figures:

In RStudio, first set the working directory to the appropriate folder (e.g., figs_tables/ or figs/), then open the corresponding R scripts and run them inside RStudio.