cgr-bambino

Bambino: SNP caller and Alignment Viewer for Next Gen Data

More Information at: https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/index.html Website for access to TCGA and public data sets : https://cgwb.nci.nih.gov/cgi-bin/bambino (if this is unavailable, use the "bambinojars.tar' file (above) to get the jars and documentation in a tar file)

Written in Java. Uses 3rd party libraries (in jar files).

Original author is Michael Edmonson at NIH (now at St. Judes).

Technical support from Richard Finney at NIH

Please cite :

Edmonson MN, Zhang J, Yan C, Finney RP, Meerzaman D, Buetow K . (2011) Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format. Bioinformatics 27: 865–866. doi:10.1093/bioinformatics/btr032.