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smsMap 04/01/2019 ver1.0.0 ICI/LIFT, China

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System Requirements

Software Requirements

The smsMap is supported on the following operating systems

Linux Windows 7 Windows 10

Hardware Requirements/Recommendations

Intel Core i3 2100 or later for Windows Color display capable of 1024 X 768 pixel resolution

Memory Requirements/Recommendations

smsMap requires approximately 2G of available disk space on the drive or partition.

smsMap requires a minimum of 8G of RAM for mapping long noisy SMS reads.

User's Guide

Input Sequences Requirements

Input file requires fasta or fastq format

Execute Step

Step 1: compile codes using make command Step 2: ./locate or ./smsMap then come out options reuired

A running example

./locate --index genome.fa ./locate --search genome.fa --seq reads.fa >pos.txt ./smsMap --seq reads.fa --genome genome.fa --pos pos.txt --out smsMap_aligned.txt

The final mapping file is smsMap_aligned.txt

Copyright Notice

Software, documentation and related materials: Copyright (c) 2019-2021 Institute of Control & Information(ICI), Northwestern Polytechnical University, China Key Laboratory of Information Fusion Technology(LIFT), Ministry of Education, China All rights reserved.