gradient\_analysis

August 24, 2016 ยท View on GitHub

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Requirements:

Python2.7:

standard packages

numpy
scipy
pandas
h5py
matplotlib
seaborn
gdist

Neuroimaging

nibabel
nilearn
neurosynth

Specific

surfdist
Already in ./gradient_data/src/: mapalign
SurfacePlotting: optional for visualization

Other software requirements

(Only for generating volumes from surfaces)
Connectome workbench: wb_command
Caret
FreeSurfer
FSL

Contents

  1. 1Python2.7:
  2. 1.1standard packages
  3. 1.2Neuroimaging