Development

Setup

git clone https://github.com/NygenAnalytics/cytetype.git
cd cytetype
uv sync --all-extras
uv run pip install -e .

Testing & Linting

uv run pytest
uv run ruff check .
uv run ruff format .
uv run mypy .

Exceptions

• CyteTypeError: Base exception
• CyteTypeAPIError: API communication issues
• CyteTypeTimeoutError: API polling timed out
• CyteTypeJobError: Upstream job reported error