Results

CyteType returns detailed annotations per cluster and stores them on your AnnData object.

Access Results

Using get_results() Method (Recommended)

The get_results() method is the recommended way to retrieve CyteType results. It provides intelligent result fetching with automatic fallback to API retrieval:

# Helper
results = annotator.get_results()

import json
results = json.loads(adata.uns["cytetype_results"]["result"])

Typical Fields (per cluster)

• annotation: primary cell type
• granularAnnotation: finer phenotype
• cellState: state/activation/malignancy
• ontologyTerm: Cell Ontology term (e.g., CL_0000127)
• confidence: model-assessed confidence
• supportingMarkers / conflictingMarkers
• missingExpression / unexpectedExpression
• corroboratingPapers: literature support

Example loop:

for ann in results["annotations"]:
    print(ann["clusterId"], ann["annotation"], ann["ontologyTerm"], ann["confidence"]) 

For end-to-end examples and reports, see Examples.