dumux-rosi provides Python interfaces for solving the Richards equation as well as general advection–diffusion–reaction systems in plant–soil interaction modelling. It leverages the nonlinear finite-volume solver of DuMu^x and is designed to integrate with CPlantBox.

Installation

Using a Pyton script

The installation scipt is located within the CPlantBox repository. This script will install the full setup: CPlantBox, dumux-rosi, and DuMu^x]. Just download and run the Python file "installDumuxRosi_Ubuntu.py" (which is based on the DuMu^x installation file).

sudo apt-get update
sudo apt-get upgrade
[ ! -d 'cpbenv' ] && python3 -m venv cpbenv &&  source cpbenv/bin/activate ||  source cpbenv/bin/activate
wget https://raw.githubusercontent.com/Plant-Root-Soil-Interactions-Modelling/CPlantBox/master/installDumuxRosi_Ubuntu.py
python3 installDumuxRosi_Ubuntu.py

Finally, run the installation script from the dumux-rosi directory:

cd dumux-rosi
./install_modules.sh

This will install dumux-rosi into your Python site-packages, making it available for import.

by hand

• Use the DuMu^x Installation Notes to set up DuMu^x
• Install CPlantBox into the DuMu^x base folder (where dune-common/, dumux/, etc. are located) according to the CPlantBox installation instruction (README.md)
• Finally, clone the dumux-rosi repository into the DuMu^x common base folder and use DUNE build system to build the repository, and run install_modules.sh in the dumux-rosi folder to make it ready for use in Python.

Further

Please read the manual (Manual.pdf on this repository)

• for installation guidelines
• getting started with examples
• folder structure is explained in the dumux-rosi wiki https://github.com/Plant-Root-Soil-Interactions-Modelling/dumux-rosi/wiki/Folder-structure