Program_Licenses.md

July 16, 2026 ยท View on GitHub

The StaPH-B/docker-builds repository is licensed under GNU GPLv3 as of 2020-01-16 (commit: https://github.com/StaPH-B/docker-builds/commit/a4f6e3c7cd7f82aab5117f6f48a292a48cc1091a )

In this repository you will find numerous dockerfiles, but no source code of the programs we have built docker images for. The one exception to this is Serotypefinder, which is licensed under Apache 2.0, and allows for the re-distribution of the source code.

The licenses of the open-source software that is contained in these Docker images should be listed in each dockerfile's metadata, but is also listed in the table below.

SoftwareLicenseLink to license
ABRicateGNU GPLv2https://github.com/tseemann/abricate/blob/master/LICENSE
ACIMIThttps://github.com/erinyoung/ACI/blob/main/LICENSE
ANIclustermapMIThttps://github.com/moshi4/ANIclustermap/blob/main/LICENSE
ARTGNU GPLv3https://www.niehs.nih.gov/research/resources/software/biostatistics/art
articMIThttps://github.com/artic-network/fieldbioinformatics/blob/master/LICENSE
artic-ncov2019-epi2meMPL 2.0https://github.com/epi2me-labs/wf-artic/blob/master/LICENSE
artic-toolsMIThttps://github.com/will-rowe/artic-tools/blob/master/LICENSE
any2fastaGNU GPLv3https://github.com/tseemann/any2fasta/blob/master/LICENSE
ArborViewApache 2.0https://github.com/phac-nml/ArborView/tree/main?tab=readme-ov-file#legal-and-compliance-information
ARIBAGNU GPLv3https://github.com/sanger-pathogens/ariba/blob/master/LICENSE
assembly_snptyperMIThttps://github.com/boasvdp/assembly_snptyper/blob/main/LICENSE
AugurGNU Affero GPLv3https://github.com/nextstrain/augur/blob/master/LICENSE.txt
AuspiceGNU Affero GPLv3https://github.com/nextstrain/auspice/blob/master/LICENSE.txt
AutocyclerGNU General Public License v3.0https://github.com/rrwick/Autocycler/blob/main/LICENSE
BaktaGNU GPLv3https://github.com/oschwengers/bakta/blob/main/LICENSE
BamtoolsMIThttps://github.com/pezmaster31/bamtools/blob/master/LICENSE
BandageGNU GPLv3https://github.com/rrwick/Bandage?tab=GPL-3.0-1-ov-file#readme
BandageNGGNU GPLv3https://github.com/asl/BandageNG/blob/dev/COPYING
BBToolsnon-standard - see licence.txt and legal.txt that is included in docker image under /bbmap/docs/; Also on sourceforge repo for BBToolshttps://github.com/bbushnell/BBTools/blob/master/license.txt
bcftoolsMIT & GNU GPLv3https://github.com/samtools/bcftools/blob/develop/LICENSE
bedtoolsMIThttps://github.com/arq5x/bedtools2/blob/master/LICENSE
bedder-rsMIThttps://github.com/quinlan-lab/bedder-rs/blob/main/LICENSE
bindashtreeMIThttps://github.com/jianshu93/bindashtree?tab=MIT-1-ov-file#readme
blast+Public Domainhttps://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/scripts/projects/blast/LICENSE
bowtie2GNU GPLv3https://github.com/BenLangmead/bowtie2/blob/master/LICENSE
BrackenGNU GPLv3https://github.com/jenniferlu717/Bracken/blob/master/LICENSE
BUSCOMIThttps://gitlab.com/ezlab/busco/-/raw/master/LICENSE
BWAGNU GPLv3https://github.com/lh3/bwa/blob/master/COPYING
Canu
Racon
Minimap2		GNU GPLv3 (Canu),
MIT (Racon),
MIT (Minimap2)		https://github.com/marbl/canu/blob/master/README.license.GPL https://github.com/isovic/racon/blob/master/LICENSE https://github.com/lh3/minimap2/blob/master/LICENSE.txt
CATMIThttps://github.com/MGXlab/CAT_pack?tab=MIT-1-ov-file#readme and https://github.com/MGXlab/CAT_pack/blob/master/LICENSE.md
cbird-utilGNU AGPLv3https://github.com/Kincekara/C-BIRD/blob/main/LICENSE
centroidGitHub No Licensehttps://github.com/https://github.com/stjacqrm/centroid
CDC-SPNGitHub No Licensehttps://github.com/BenJamesMetcalf/Spn_Scripts_Reference
cfsan-snp-pipelinenon-standard license see -->https://github.com/CFSAN-Biostatistics/snp-pipeline/blob/master/LICENSE.txt
CheckMGNU GPLv3https://github.com/Ecogenomics/CheckM/blob/master/LICENSE
CheckM2GNU GPLv3https://github.com/chklovski/CheckM2/blob/main/LICENSE
CheckVMIThttps://bitbucket.org/berkeleylab/checkv/src/master/LICENSE.txt
CirclatorGNU GPLv3https://github.com/sanger-pathogens/circlator/blob/master/LICENSE
CircosGNU GPLv3https://circos.ca/
CirculoCovGNU GPLv3https://github.com/erinyoung/CirculoCov/blob/main/LICENSE
Clair3non-standardhttps://github.com/HKU-BAL/Clair3/blob/main/LICENSE.md
coloridMIThttps://github.com/hcdenbakker/colorid/blob/master/LICENSE
Core-SNP-filterGNU General Public License v3.0https://github.com/rrwick/Core-SNP-filter/blob/main/LICENSE
datasets-sars-cov-2Apache 2.0https://github.com/CDCgov/datasets-sars-cov-2/blob/master/LICENSE
diamondGNU GPLv3https://github.com/bbuchfink/diamond/blob/master/LICENSE
dnaaplerMIThttps://github.com/gbouras13/dnaapler/blob/main/LICENSE
doradoOxford Nanopore Technologies PLC Public LicenseONT License
dragonflyeGNU GPLv3https://github.com/rpetit3/dragonflye/blob/main/LICENSE
drprgMIThttps://github.com/mbhall88/drprg/blob/main/LICENSE
DSKGNU Affero GPLv3https://github.com/GATB/dsk/blob/master/LICENSE
ectyperApache 2.0https://github.com/phac-nml/ecoli_serotyping/blob/master/LICENSE
el_gatoMIThttps://github.com/appliedbinf/el_gato/blob/main/LICENSE https://github.com/CDCgov/el_gato/blob/main/LICENSE
embossGNU GPLv3http://emboss.sourceforge.net/licence/
emmtyperGNU GPLv3https://github.com/MDU-PHL/emmtyper/blob/master/LICENSE
emm-typing-toolGNU GPLv3https://github.com/phe-bioinformatics/emm-typing-tool/blob/master/LICENCE
enabrowsertoolsApache v2.0https://github.com/enasequence/enaBrowserTools/blob/master/LICENSE
EToKiGNU GPLv3https://github.com/zheminzhou/EToKi/blob/master/LICENSE
falcoGNU GPLv3https://github.com/smithlabcode/falco/blob/master/LICENSE
FastANIApache v2.0https://github.com/ParBLiSS/FastANI/blob/master/LICENSE
fastenMIThttps://github.com/lskatz/fasten/blob/master/LICENSE
FastpMIThttps://github.com/OpenGene/fastp/blob/master/LICENSE
FastplongMIThttps://github.com/OpenGene/fastplong/blob/main/LICENSE
FastTreeGNU General Public License v3.0https://github.com/morgannprice/fasttree/blob/main/LICENSE
FastQCGNU GPLv3https://github.com/s-andrews/FastQC/blob/master/LICENSE.txt
fastq-scanMIThttps://github.com/rpetit3/fastq-scan/blob/master/LICENSE
FreebayesMIThttps://github.com/freebayes/freebayes/blob/master/LICENSE
FiltlongGNU GPLv3https://github.com/rrwick/Filtlong/blob/master/LICENSE
FLASHGNU GPLv3https://github.com/ebiggers/flash/blob/master/COPYING
FlyeBSD-3https://github.com/fenderglass/Flye/blob/flye/LICENSE
FreyjaBSD-2https://github.com/andersen-lab/Freyja/blob/main/LICENSE
GAMBITGNU aGPLv3https://github.com/jlumpe/gambit/blob/master/LICENSE
GAMMAApache 2.0https://github.com/rastanton/GAMMA/blob/main/LICENSE
GenoFluGNU GPL v3https://github.com/USDA-VS/GenoFLU/blob/main/LICENSE
GenotyphiGNU GPLv3https://github.com/katholt/genotyphi/blob/main/LICENSE
geNomadACADEMIC, INTERNAL, RESEARCH & DEVELOPMENT, NON-COMMERCIAL USE ONLYhttps://github.com/apcamargo/genomad/blob/main/LICENSE
GenoViBY-NC-SA Creative Commons Licensehttps://github.com/robotoD/GenoVi/blob/main/LICENSE.txt
gfastatsMIThttps://github.com/vgl-hub/gfastats/blob/main/LICENSE
gotreeGPL-2.0 licensehttps://github.com/evolbioinfo/gotree/blob/master/LICENSE
GrandeurGNU General Public License v3.0https://github.com/UPHL-BioNGS/Grandeur/blob/main/LICENSE
GubbinsGNU GPLv2https://github.com/nickjcroucher/gubbins/blob/master/LICENSE
HeatClusterGPL-3.0https://github.com/DrB-S/heatcluster/blob/main/LICENSE ; https://github.com/erinyoung/heatcluster/blob/main/LICENSE
HifiasmMIThttps://github.com/chhylp123/hifiasm/blob/master/LICENSE
hifiasm-metaMIThttps://github.com/xfengnefx/hifiasm-meta/blob/meta/LICENSE
HmmerBSD-3http://eddylab.org/software/hmmer/Userguide.pdf
HoCoRTMIThttps://github.com/ignasrum/hocort?tab=MIT-1-ov-file#readme
homopolishGNU GPLv3https://github.com/ythuang0522/homopolish/blob/master/LICENSE
hostileMIThttps://github.com/bede/hostile?tab=MIT-1-ov-file#readme
htslibMIThttps://github.com/samtools/htslib/blob/develop/LICENSE
IGV-ReportsMIThttps://github.com/igvteam/igv-reports/blob/master/LICENSE.md
Integron FinderGNU GPLv3https://github.com/gem-pasteur/Integron_Finder/blob/master/COPYING
iqtreeGNU GPLv2https://github.com/Cibiv/IQ-TREE/blob/master/LICENSE
iqtree2GNU GPLv2https://github.com/iqtree/iqtree2/blob/master/LICENSE
iqtree3GNU GPLv2https://github.com/iqtree/iqtree3/blob/master/LICENSE
IPABSD-3https://github.com/PacificBiosciences/pbipa/blob/master/LICENSE.txt
IRMAGNU GPLv3 ; Apache License 2.0https://wonder.cdc.gov/amd/flu/irma/disclaimer.html ; https://github.com/CDCgov/irma/blob/master/LICENSE
isPcrnon-standard - see README in sourcehttps://hgwdev.gi.ucsc.edu/~kent/src/isPcr33.zip
iVarGNU GPLv3https://github.com/andersen-lab/ivar/blob/master/LICENSE
JasmineBSD-3https://github.com/PacificBiosciences/jasmine/blob/main/LICENSE
KaptiveGNU GPLv3https://github.com/katholt/Kaptive/blob/master/LICENSE
KleborateGNU GPLv3https://github.com/katholt/Kleborate/blob/master/LICENSE
kmaApache v2.0https://bitbucket.org/genomicepidemiology/kma/src/master/
KrakenGNU GPLv3https://github.com/DerrickWood/kraken/blob/master/LICENSE
Kraken2MIThttps://github.com/DerrickWood/kraken2/blob/master/LICENSE
KrakenToolsGNU GPLv3https://github.com/jenniferlu717/KrakenTools/blob/master/LICENSE
KrakenUniqGNU GPLv3https://github.com/fbreitwieser/krakenuniq/blob/master/LICENSE
krocusGNU GPLv3https://github.com/andrewjpage/krocus/blob/master/LICENSE
Kronanon-standard license (see link)https://github.com/marbl/Krona/blob/master/KronaTools/LICENSE.txt
kSNP3BSDavailable in zipped kSNP archive on sourceforge or in docker image under /kSNP3.1_Linux_package/THE BSD OPENSOURCE LICENSE.pdf
kSNP4BSDavailable in zipped kSNP archive on sourceforge or in docker image under /opt/kSNP4 Linux package/Documentation/THE BSD OPENSOURCE LICENSE.pdf
LABELApache License 2.0https://github.com/CDCgov/label/blob/master/LICENSE
legstaGNU GPLv3https://github.com/tseemann/legsta/blob/master/LICENSE
liftoffGNU GPLv3https://github.com/agshumate/Liftoff/blob/master/LICENSE.md
limaBSD-3https://github.com/PacificBiosciences/barcoding/blob/master/LICENSE
lisseroGNU GPLv3https://github.com/MDU-PHL/LisSero/blob/master/LICENSE
LJABSD-3https://github.com/AntonBankevich/LJA/blob/main/LICENSE
longshotMIThttps://github.com/pjedge/longshot/blob/master/LICENSE
lrgeMIThttps://github.com/mbhall88/lrge?tab=MIT-1-ov-file#readme
Lyve-SETMIThttps://github.com/lskatz/lyve-SET/blob/master/LICENSE
MafftBSDhttps://mafft.cbrc.jp/alignment/software/license.txt
Mashnon-standard license (see link)https://github.com/marbl/Mash/blob/master/LICENSE.txt
mashtreeGNU GPLv3https://github.com/lskatz/mashtree/blob/master/LICENSE
MaSuRCAGNU GPLv3https://github.com/alekseyzimin/masurca/blob/master/LICENSE.txt
MedakaMozilla Public License 2.0https://github.com/nanoporetech/medaka/blob/master/LICENSE.md
meningotypeGNU General Public License v3.0https://github.com/MDU-PHL/meningotype/blob/master/LICENSE
metaMDBGMIThttps://github.com/GaetanBenoitDev/metaMDBG/blob/main/LICENSE.md
MetaphlanMIThttps://github.com/biobakery/MetaPhlAn/blob/master/license.txt
MIDASGNU GPLv3https://github.com/snayfach/MIDAS/blob/master/LICENSE
minimap2MIThttps://github.com/lh3/minimap2/blob/master/LICENSE.txt
miniasmMIThttps://github.com/lh3/miniasm/blob/master/LICENSE.txt
minipolishGNU GPLv3https://github.com/rrwick/Minipolish/blob/main/LICENSE
mlstGNU GPLv2https://github.com/tseemann/mlst/blob/master/LICENSE
MMseqs2MIThttps://github.com/soedinglab/MMseqs2/blob/master/LICENSE.md
mob-suiteApache v2.0https://github.com/phac-nml/mob-suite/blob/master/LICENSE
MugsyArtistic License 2.0Archived in:
https://sourceforge.net/projects/mugsy/files/mugsy_x86-64-v1r2.3.tgz
MultiQCGNU GPLv3https://github.com/ewels/MultiQC/blob/master/LICENSE
MummerThe Artistic License 2.0https://github.com/mummer4/mummer/blob/master/LICENSE.md
MykrobeMIThttps://github.com/Mykrobe-tools/mykrobe/blob/master/LICENSE
myloasmMIThttps://github.com/bluenote-1577/myloasm/blob/main/LICENSE
NanoPlotGNU GPLv3https://github.com/wdecoster/NanoPlot/blob/master/LICENSE
NCBI AMRFinderPlusPublic Domainhttps://github.com/ncbi/amr/blob/master/LICENSE
NCBI DatasetsPublic Domainhttps://github.com/ncbi/datasets/blob/master/LICENSE.md
NCBI table2asnPublic Domainunknown
NextDenovoGNU GPLv3https://github.com/Nextomics/NextDenovo/blob/master/LICENSE
nextPolishGNU GPLv3https://github.com/Nextomics/NextPolish/blob/master/LICENSE
ngmasterGNU GPLv3https://github.com/MDU-PHL/ngmaster/blob/master/LICENSE
ONTimeMIThttps://github.com/mbhall88/ontime/blob/main/LICENSE
OrthoFinderGNU GPLv3https://github.com/davidemms/OrthoFinder/blob/master/License.md
PanarooMIThttps://github.com/gtonkinhill/panaroo/blob/master/LICENSE
pandasBSD 3-Clause Licensehttps://github.com/pandas-dev/pandas?tab=BSD-3-Clause-1-ov-file#readme
pango_aliasorMIThttps://github.com/corneliusroemer/pango_aliasor/blob/main/LICENSE
PangolinGNU GPLv3https://github.com/cov-lineages/pangolin/blob/master/LICENSE.txt
panqcMIThttps://github.com/maxgmarin/panqc/blob/main/LICENSE
ParsnpBattelle National Biodefense Institute (BNBI)https://github.com/marbl/parsnp?tab=License-1-ov-file#readme
pastyApache 2.0https://github.com/rpetit3/pasty/blob/main/LICENSE
PavianGNU GPLv3https://github.com/fbreitwieser/pavian/blob/master/DESCRIPTION
pbmm2BSD-3https://github.com/PacificBiosciences/pbmm2/blob/develop/LICENSE
pbptyperMIThttps://github.com/rpetit3/pbptyper/blob/main/LICENSE
PBSIM3GNU GPLv2https://github.com/yukiteruono/pbsim3/blob/master/COPYING
pbtkBSD-3https://github.com/PacificBiosciences/pbtk/blob/main/LICENSE.txt
PhymlGNU GPLv3https://github.com/stephaneguindon/phyml/blob/master/COPYING
phyTreeVizMIThttps://github.com/moshi4/phyTreeViz/blob/main/LICENSE
PiggyGNU GPLv3https://github.com/harry-thorpe/piggy/blob/master/LICENSE
PilonGNU GPLv2https://github.com/broadinstitute/pilon/blob/master/LICENSE
PiranhaGNU GPLv3https://github.com/polio-nanopore/piranha/blob/main/LICENSE
PlasmidSeekerBSD 3-Clausehttps://github.com/bioinfo-ut/PlasmidSeeker/blob/master/LICENSE
plassemblerMIThttps://github.com/gbouras13/plassembler/blob/main/LICENSE
plingMIThttps://github.com/iqbal-lab-org/pling/blob/main/LICENSE
pmgaGNU GPLv2https://github.com/rpetit3/pmga/blob/master/LICENSE
pod5Mozilla Public License Version 2.0https://github.com/nanoporetech/pod5-file-format/blob/master/LICENSE.md
polypolishGNU GPLv3https://github.com/rrwick/Polypolish/blob/main/LICENSE
PopPUNKApache 2.0https://github.com/bacpop/PopPUNK/blob/master/LICENSE
PorechopGNU GPLv3https://github.com/rrwick/Porechop/blob/master/LICENSE
PPanGGOLiNCeCILL 2.1https://github.com/labgem/PPanGGOLiN/blob/master/LICENSE.txt
Primer3GNU General Public License v2.0https://github.com/primer3-org/primer3/blob/main/LICENSE
ProkkaGNU GPLv3https://raw.githubusercontent.com/tseemann/prokka/master/doc/LICENSE.Prokka
pyCirclizeMIThttps://github.com/moshi4/pyCirclize/blob/main/LICENSE
pyGenomeVizMIThttps://github.com/moshi4/pyGenomeViz/blob/main/LICENSE
pyMLSTGNU GPLv3https://github.com/bvalot/pyMLST/blob/master/LICENSE
pypolcaMIThttps://github.com/gbouras13/pypolca/blob/main/LICENSE
QualiMapGNU GPLv2https://bitbucket.org/kokonech/qualimap/src/master/LICENSE
QUASTGNU GPLv2https://github.com/ablab/quast/blob/master/LICENSE.txt
QuickSNPGNU GPLv3https://github.com/k-florek/QuickSNP/blob/main/LICENSE
raconMIThttps://github.com/lbcb-sci/racon/blob/master/LICENSE ; https://github.com/isovic/racon/blob/master/LICENSE
rasusaMIThttps://github.com/mbhall88/rasusa/blob/master/LICENSE
ravenMIThttps://github.com/lbcb-sci/raven/blob/master/LICENSE
RAxMLGNU GPLv3https://github.com/stamatak/standard-RAxML/blob/master/gpl-3.0.txt
RAxML-NGGNU AGPLv3https://github.com/amkozlov/raxml-ng/blob/master/LICENSE.txt
RAxML-NGGNU GPLv2https://www.gnu.org/licenses/old-licenses/gpl-2.0.en.html
ResFinderApache 2.0https://bitbucket.org/genomicepidemiology/resfinder/src/master/
RoaryGNU GPLv3https://github.com/sanger-pathogens/Roary/blob/master/GPL-LICENSE
SalmIDMIThttps://github.com/hcdenbakker/SalmID/blob/master/LICENSE
samclipGNU GPLv3https://github.com/tseemann/samclip/blob/master/LICENSE
SamtoolsGNU GPLv3https://github.com/samtools/samtools/blob/develop/LICENSE
SeqFuGNU GPLv3https://github.com/telatin/seqfu2
SeqKitMIThttps://github.com/shenwei356/seqkit/blob/master/LICENSE
SeqSenderApache 2.0https://github.com/CDCgov/seqsender/blob/master/LICENSE
SeqSeroGNU GPLv2https://github.com/denglab/SeqSero/blob/master/LICENSE
SeqSero2GNU GPLv2https://github.com/denglab/SeqSero2/blob/master/LICENSE
SeqSero2SGNU GPLv2https://github.com/LSTUGA/SeqSero2S/blob/main/LICENSE
seqycleanMIThttps://github.com/ibest/seqyclean/blob/master/LICENSE
seqtkMIThttps://github.com/lh3/seqtk/blob/master/LICENSE
SerobaGNU GPLv3https://github.com/sanger-pathogens/seroba/blob/master/LICENSE
https://github.com/GlobalPneumoSeq/seroba/blob/master/LICENSE
SerotypeFinderApache 2.0https://bitbucket.org/genomicepidemiology/serotypefinder/
ShigaPassGNU GPLv3https://github.com/imanyass/ShigaPass/blob/main/LICENSE
shigatypernon-standard license see -->https://github.com/CFSAN-Biostatistics/shigatyper/blob/master/LICENSE
ShigEiFinderGNU GPLv3https://github.com/LanLab/ShigEiFinder/blob/main/LICENSE
ShovillGNU GPLv3https://github.com/tseemann/shovill/blob/master/LICENSE
simplot-clGNU GPLv3https://github.com/hodcroftlab/simplot-cl/blob/main/LICENSE.txt
SISTRApache 2.0https://github.com/phac-nml/sistr_cmd/blob/master/LICENSE
SKAMIThttps://github.com/simonrharris/SKA/blob/master/LICENSE
SKA2Apache 2.0https://github.com/bacpop/ska.rust/blob/master/LICENSE
skaniMIThttps://github.com/bluenote-1577/skani/blob/main/LICENSE
SKESAPublic Domainhttps://github.com/ncbi/SKESA/blob/master/LICENSE
SmaltGNU GPLv3https://www.sanger.ac.uk/tool/smalt-0/
SnpEffMIThttps://github.com/pcingola/SnpEff/blob/master/LICENSE.md
SnippyGNU GPLv2https://github.com/tseemann/snippy/blob/master/LICENSE
snp-distsGNU GPLv3https://github.com/tseemann/snp-dists/blob/master/LICENSE
SNP-sitesGNU GPLv3https://github.com/sanger-pathogens/snp-sites/blob/master/LICENSE
SNVPhyl-toolsApache 2.0https://github.com/phac-nml/snvphyl-tools/blob/master/LICENSE
SPAdesGNU GPLv2https://github.com/ablab/spades/blob/main/LICENSE
SpestimatorMIThttps://github.com/erinyoung/Spestimator?tab=MIT-1-ov-file
SRA-toolkitPublic Domainhttps://github.com/ncbi/sra-tools/blob/master/LICENSE
SRST2BSDhttps://github.com/katholt/srst2/blob/master/LICENSE.txt
StaphSCANMIThttps://github.com/riccabolla/StaphSCAN/blob/main/LICENSE
StaramrApache 2.0https://github.com/phac-nml/staramr/blob/master/LICENSE
stxtyperPublic Domainhttps://github.com/ncbi/stxtyper/blob/main/LICENSE
sylphMIThttps://github.com/bluenote-1577/sylph/blob/main/LICENSE
TBProfilerGNU GPLv3https://github.com/jodyphelan/TBProfiler/blob/master/LICENSE
TipToftGNU GPLv3https://github.com/andrewjpage/tiptoft/blob/master/LICENSE
TostadasApache-2.0 licensehttps://github.com/CDCgov/tostadas/blob/master/LICENSE
toulligqcGNU GPLv3https://github.com/GenomiqueENS/toulligQC/blob/master/LICENSE.txt
transclusterGNU GPLv3https://github.com/JamesStimson/transcluster/blob/master/DESCRIPTION
TreemmerGNU GPLv3https://github.com/fmenardo/Treemmer/blob/master/COPYING
TrimalGNU GPLv3https://github.com/inab/trimal?tab=GPL-3.0-1-ov-file#readme
TrimmomaticGNU GPLv3https://github.com/usadellab/Trimmomatic/blob/main/distSrc/LICENSE
TrycyclerGNU GPLv3https://github.com/rrwick/Trycycler/blob/master/LICENSE
UnicyclerGNU GPLv3https://github.com/rrwick/Unicycler/blob/master/LICENSE
UShERMIThttps://github.com/yatisht/usher/blob/master/LICENSE
VADRPublic Domainhttps://github.com/NLM-DIR/vadr/blob/master/LICENSE
VerkkoPublic Domainhttps://github.com/marbl/verkko/blob/master/README.licenses
VIBRANTGNU GPLv3https://github.com/AnantharamanLab/VIBRANT/blob/master/LICENSE
VIGOR4GNU GPLv3https://github.com/JCVenterInstitute/VIGOR4/blob/master/LICENSE.txt
ViridianMIThttps://github.com/iqbal-lab-org/viridian/blob/master/LICENSE
VirSorter2GNU GPLv2https://github.com/jiarong/VirSorter2/blob/master/LICENSE
VirulenceFinderApache 2.0https://bitbucket.org/genomicepidemiology/virulencefinder/src/master/
wtdbg2GNU GPLv3https://github.com/ruanjue/wtdbg2/blob/master/LICENSE.txt