Diachromatic

This package implements truncation, alignment, artifact filtering and counting of Hi-C read pairs.

Download

Diachromatic requires Java 11 or higher to run. We recommend downloading the latest version from the release page of the project.

You can run the program using this command:

java -jar Diachromatic.jar

You should see a help message in the shell.

Documentation

The documentation of Diachromatic is available at https://thejacksonlaboratory.github.io/diachromatic.

Building Diachromatic

To build the application on your own, clone the repository and build the app with the amazing Maven wrapper:

git clone https://github.com/TheJacksonLaboratory/diachromatic.git
cd diachromatic
./mvnw package

To test whether the build process was successful, enter the following command:

java -jar target/Diachromatic.jar