README

fastqcheck is a program that reads fastq files (sequencing data: http://maq.sourceforge.net/fastq.shtml).

It generates statistics about the files (for example, how many reads and bases there were).

It can be used as a validator of fastq files (though is perhaps stricter that the spec).

Usage: $fastqcheck lane1.fastq > lane1.fastq.fastqcheck$ gunzip -c lane1.fastq.gz | fastqcheck > lan1.fastq.gz.fastqcheck

Compilation: gcc -std=c99 readseq.c fastqcheck.c -o fastqcheck -lm

Then simply include the resulting fastqcheck executable in your $PATH.

COPYRIGHT & LICENSE

Copyright (c) 1993, 2006, 2009, 2010, 2013 Genome Research Limited.

This file is part of fastqcheck.

fastqcheck is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see Lhttp://www.gnu.org/licenses/.

The usage of a range of years within a copyright statement contained within this distribution should be interpreted as being equivalent to a list of years including the first and last year specified and all consecutive years between them. For example, a copyright statement that reads 'Copyright (c) 2005, 2007- 2009, 2011-2012' should be interpreted as being identical to a statement that reads 'Copyright (c) 2005, 2007, 2008, 2009, 2011, 2012' and a copyright statement that reads "Copyright (c) 2005-2012' should be interpreted as being identical to a statement that reads 'Copyright (c) 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012'."