clusterProfiler

July 27, 2026 ยท View on GitHub

Project Status: Active - The project has reached a stable, usable state and is being actively developed. Bioc

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  • clusterProfiler supports exploring functional characteristics of both coding and non-coding genomics data for thousands of species with up-to-date gene annotation.
  • It provides a universal interface for gene functional annotation from a variety of sources and thus can be applied in diverse scenarios.
  • It provides a tidy interface to access, manipulate, and visualize enrichment results to help users achieve efficient data interpretation
  • Datasets obtained from multiple treatments and time points can be analyzed and compared in a single run, easily revealing functional consensus and differences among distinct conditions
  • It uses enrichit as the underlying engine for ORA, GSEA, and topology-aware enrichment analysis, while providing a high-level and user-friendly interface for biological interpretation

For details, please visit:

:writing_hand: Authors

Guangchuang YU https://yulab-smu.top

School of Basic Medical Sciences, Southern Medical University