Liger

November 6, 2019 ยท View on GitHub

Synthetic Scaffolding Graph construction, Overlaps, Scaffolding, Validation, Gap filling and Polishing. Liger is a Wengan component.

Installation

To install liger run the following commands:

git clone --recursive https://github.com/adigenova/liger.git liger
cd liger
sh install.sh

c++ compiler; compilation was tested with gcc version GCC/7.3.0-2.30 (Linux) and clang-1000.11.45.5 (Mac OSX). cmake 3.2+.

External libraries

edlib

repo:https://github.com/Martinsos/edlib.git
commit:26a43772a1ab73f60b29151f6454ecf3546f150e

spoa

repo:https://github.com/rvaser/spoa.git
commit:da55fdf4d23c2f688c8fbb1042efbff10277237b

lemon

version:lemon-1.3.1
url:http://lemon.cs.elte.hu/pub/sources/lemon-1.3.1.tar.gz