T2T-HG002Y

Code repository for the T2T-Y paper

This repository contains custom codes for data anslysis and visualization described in The complete sequence of a human Y chromosome.

External repositories

• Assembly string graph construction and resoultion: https://github.com/snurk/sg_sandbox
• 1KGP and SGDP short-read variant calling: https://github.com/schatzlab/t2t-chm13-chry
• Resources available for T2T-CHM13v2.0 as a reference: https://github.com/marbl/CHM13
• Known issues in T2T-CHM13v2.0: https://github.com/marbl/CHM13-Issues