TOC

• Notes
• Examples
• Animations
• Unstable Features
• Tips

Notes

• View static notebook on nbviewer server
• View live demo

Examples

• representations and selection language
• using two screens
• view trajectory
• make movie
• render and export image for publication
• membrane
• display ccp4 file
• protein mutation and minimization with AmberTools

Animations

• mdanalysis
• pytraj
• mdtraj
• parmed
• Structure minimization

Unstable Features

• customize color
• change theme
• display GUI
• pop up viewer
• real time MD visualization

Tips

• Using notebook remotely