hicstuff
December 19, 2018 ยท View on GitHub
A lightweight library that generates and handles Hi-C contact maps in either CSV or instaGRAAL format.
Installation
pip3 install hicstuff
Usage
Contact map generation
yahcp -1 reads_forward.fastq -2 reads_reverse.fastq -f genome.fa [-s size] [-o output_directory] [-e enzyme] [-q quality_min] [--duplicates] [--clean-up]
See yahcp for more information.
Contact map visualization
vizmap -h
Library
See the documentation on reathedocs.