A Toolkit for Pathology Image Analysis
January 19, 2025 ยท View on GitHub
Reminder !!!
Please use the our GPFM repo, the censorship in the survival csv file is flipped.
Step 1: Patching
Crop patches from WSI.
cd Patching
# segment the tissue and get the coors
bash get_coor_scripts/CPTAC.sh
# crop patches from WSI if need
bash crop_image_scripts/CPTAC.sh
Step 2: Extracting features
cd ..
bash extract_scripts/CPTAC.sh