MoleculeNet Leaderboard

April 21, 2021 ยท View on GitHub

Physical Chemistry

Delaney (ESOL)

RankModelFeaturizationTest RMSEValidation RMSEContactReferencesDate
1GCNGraphConv0.8851 +- 0.02920.9405 +- 0.0310Mufei LiPaper, CodeJan 28th, 2020
2Random Forest1024-bit ECFP41.7406 +- 0.02611.7932 +- 0.0153Mufei LiPaper, CodeJan 28th, 2020

Lipo

RankModelFeaturizationTest RMSEValidation RMSEContactReferencesDate
1GCNGraphConv0.7806 +- 0.04040.7897 +- 0.0553Yuanqi DuPaper, CodeFeb 13th, 2021
2Random Forest1024-bit ECFP40.9621 +- 0.00301.0024 +- 0.0029Yuanqi DuPaper, CodeFeb 13th, 2021

Biophysics

BACE Classification

RankModelFeaturizationTest ROC-AUCValidation ROC-AUCContactReferencesDate
1Random Forest1024-bit ECFP40.8507 +- 0.00720.7368 +- 0.0066Mufei LiPaper, CodeDec 2nd, 2020
2GCNGraphConv0.8175 +- 0.01930.7430 +- 0.0194Mufei LiPaper, CodeDec 20th, 2020

BACE Regression

RankModelFeaturizationTest RMSEValidation RMSEContactReferencesDate
1Random Forest1024-bit ECFP41.3178 +- 0.00810.6716 +- 0.0059Mufei LiPaper, CodeDec 26th, 2020
2GCNGraphConv1.6450 +- 0.13250.5244 +- 0.0200Mufei LiPaper, CodeDec 26th, 2020

PDBbind (core)

RankModelFeaturizationTest RMSE (R^2)Validation RMSE (R^2)ContactReferencesDate
1ACNNAtomicConv1.8604 +- 0.0540 (0.5405 +- 0.0124)1.5885 +- 0.0865 (0.6015 +- 0.0330)Nathan FreyPaper, CodeMarch 24, 2021

Physiology

BBBP

RankModelFeaturizationTest ROC-AUCValidation ROC-AUCContactReferencesDate
1Random Forest1024-bit ECFP40.7194 +- 0.00680.9713 +- 0.0013Mufei LiPaper, CodeDec 30th, 2020
2GCNGraphConv0.6760 +- 0.01950.9736 +- 0.0027Mufei LiPaper, CodeDec 30th, 2020

ClinTox

RankModelFeaturizationTest ROC-AUCValidation ROC-AUCContactReferencesDate
1GCNGraphConv0.9065 +- 0.01790.9880 +- 0.0073Mufei LiPaper, CodeJan 22nd, 2021
2Random Forest1024-bit ECFP40.7829 +- 0.02350.8883 +- 0.0230Mufei LiPaper, CodeJan 22nd, 2021

SIDER

RankModelFeaturizationTest ROC-AUCValidation ROC-AUCContactReferencesDate
1Random Forest1024-bit ECFP40.6504 +- 0.00110.6197 +- 0.0023Yuanqi DuPaper, CodeFeb 10th, 2021
2GCNGraphConv0.6265 +- 0.00760.6409 +- 0.0094Yuanqi DuPaper, CodeFeb 10th, 2021

Materials Science

HOPV

RankModelFeaturizationTest RMSEValidation RMSEContactReferencesDate
1Random Forest1024-bit ECFP43.7283 +- 0.02192.7107 +- 0.0173Mufei LiPaper, CodeFeb 4th, 2021
2GCNGraphConv5.4312 +- 2.42792.6516 +- 0.1190Mufei LiPaper, CodeFeb 4th, 2021