satool

January 27, 2020 ยท View on GitHub

satool is a tool for managing SAT format.

Dependencies

  1. zlib

Third parties

  1. graphviz

Installation

Please use the following code to install satool:

git clone https://github.com/dfguan/satool.git
cd satool/src && make

Usage

Convert SAT to AGP

Given a sat file, convert it into AGP format

bin/satool agp $sat > t.agp

Visualize a scaffold

Given a scaffold name scf and sat, visualize it

bin/satool vis -s $scf $sat > t.dot
dot -Tpng -o t.png t.dot

sample

Contents

  1. 1Dependencies
  2. 2Third parties
  3. 3Installation
  4. 4Usage
  5. 4.1Convert SAT to AGP
  6. 4.2Visualize a scaffold