ENCODE-specific tracks

NGB supports the uploading and reading of the ENCODE-specific formats.

As the ENCODE-specific formats are "BED-compatible" with some additional columns - so the exposing of the ENCODE-specific files to the client is being performed in the same manner as for the BED format.
The only distinct - data values from additional columns that are not present in the original BED format can be viewed only via the features info, these values aren't affected the track displaying.

Supported ENCODE-specific formats in NGB:

Format	Features	File extension to register
ENCODE broadPeak format	"Broad Peaks Format". It is a BED6+3 format	broadPeak, bPk, broadPeak.gz, bPk.gz
ENCODE gappedPeak format	"Gapped Peaks Format". It is a BED12+3 format	gappedPeak, gPk, gappedPeak.gz, gPk.gz
ENCODE narrowPeak format	"Narrow Peaks Format" (or "Point-Source"). It is a BED6+4 format	narrowPeak, nPk, narrowPeak.gz, nPk.gz
ENCODE pairedTagAlign format	"Tag Alignment Format for Paired Reads". It is a BED6+2 format	pairedTagAlign, pta, pairedTagAlign.gz, pta.gz
ENCODE peptideMapping format	"The Peptide Mapping Format". It is a BED6+4 format	peptideMapping, pMap, peptideMapping.gz, pMap.gz
ENCODE RNA elements format	It is a BED6+3 format	RNAelements, RNAe, RNAelements.gz, RNAe.gz
ENCODE tagAlign format	"Tag Alignment Format". It is a BED3+3 format	tagAlign, ta, tagAlign.gz, ta.gz

Example of the narrowPeak track displaying:

For the ENCODE-specific files, are supported:

• common tracks' features: selection, renaming, height resizing, label font resizing
• specific features: changing of the track color