GeneMark-ETP

Gene finding in eukaryotic genomes by GeneMark-ETP

Reference

GeneMark-ETP: Automatic Gene Finding in Eukaryotic Genomes in Consistence with Extrinsic Data
Tomas Bruna, Alexandre Lomsadze, Mark Borodovsky
Genome Res. 2024. 34: 757-768

Georgia Institute of Technology, Atlanta, Georgia, USA

Experiments

The repository with documentation of experiments, data, and results for the GeneMark-ETP project is available at https://github.com/gatech-genemark/GeneMark-ETP-exp

Instructions

Usage:

gmetp.pl --cores 32 --cfg input.cfg

Examples of input configuration files can be found at https://github.com/gatech-genemark/GeneMark-ETP-exp

Software license

GeneMark-ETP pipeline

GeneMark-ETP is distributed under Creative Commons Attribution NonCommercial ShareAlike 4.0 License. See the full text of the license.

Third-party tools

Third-party tools are in the folder "tools." These tools are distributed under the licensing terms of the respective license holders. For details, see the installation instructions and corresponding references.