README.md

Dseqr

End-to-End RNA-Seq Analysis

Dseqr is a web application that helps you run 10X single-cell and bulk RNA-seq analyses from fastq → pathways → drug candidates.

💡 Read the Docs →

Local setup with Docker

# pull image
docker pull alexvpickering/dseqr --platform linux/amd64

# make directory to store data
mkdir dseqr_data

# run at http://0.0.0.0:3838/ and keep data on exit
docker run -v $(pwd)/dseqr_data:/srv/dseqr \
-p 3838:3838 \
alexvpickering/dseqr R -e 'library(dseqr); run_dseqr("example", "/srv/dseqr")'