TranscriptComparison.md

TranscriptComparison tool help

TranscriptComparison (2025_07-127-g60fc6b39)

Compares transcripts from Ensembl and RefSeq/CCDS.

Mandatory parameters:
  -ensembl <file>   Ensembl GFF file.
  -refseq <file>    RefSeq GFF file.

Optional parameters:
  -out <file>       Output TSV file with matches.
                    Default value: ''
  -min_ol <float>   Minimum overall/CDS overlap percentage for printing out a relation if there is no perfect match (disabled by default).
                    Default value: '100'
  -test             Uses the test database instead of on the production database.
                    Default value: 'false'

Special parameters:
  --help            Shows this help and exits.
  --version         Prints version and exits.
  --changelog       Prints changeloge and exits.
  --tdx             Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
  --settings [file] Settings override file (no other settings files are used).

TranscriptComparison changelog

TranscriptComparison 2025_07-127-g60fc6b39

2024-09-26 First version.

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