ome-ngff-tables-prototype

May 2, 2022 ยท View on GitHub

prototype python implementation of the ome-ngff table spec

Installation

pip install git+https://github.com/kevinyamauchi/ome-ngff-tables-prototype

Usage

To make an example OME-Zarr dataset with an image and points data, run the examples/save_load_points.py example.

Additionally, you can view the zarr files with a points table that is generated by examples/save_load_points.py in examples/test_image.zarr.

Additional examples available are:

  • examples/squidpy_visium.py which saves this dataset in OME-Zarr.
  • examples/squidpy_segment.py which saves this dataset in OME-Zarr.