Limitations of the refolding pipeline for de novo protein design

The preprint can be found here: https://doi.org/10.64898/2025.12.09.693122

All non-schematic figures used in the paper are generated with the code in Plots.ipynb and saved in ./figures. Figures used in the SI are saved in ./figures/figures_SI. The underlying functions are imported from plotting_analysis.py. All processed data used to generate the figures is saved in ./data, and input files and scripts neccesary to rerun the data are saved in ./generate_data. For each figure, a short explanation regarding what input files, scripts, data, and functions where used to generate the final figures is given in Plots.ipynb.