stGRL: spatial domain identification, denoising, and imputation algorithm for spatial transcriptome data based on multi-task graph contrastive representation learning

Overview

Requirements

You'll need to install the following packages in order to run the codes.

• python==3.8.20
• torch==1.10.0
• torch-cluster==1.5.9
• torch-geometric==2.5.3
• torch-scatter==2.0.9
• torch-sparse==0.6.12
• torch-spline-conv==1.2.1
• scanpy==1.9.8
• numpy==1.24.4
• anndata==0.9.2
• rpy2==3.5.17
• pandas==2.0.3
• scipy==1.10.1
• scikit-learn==1.3.2
• tqdm==4.66.5
• matplotlib==3.7.5
• R==4.2.0