Deployment

Requirements

• Google Cloud SDK

  Instructions for installing and initializing the Google Cloud SDK are available at https://cloud.google.com/sdk/.

• Docker

  Instructions for installing Docker are available at https://docs.docker.com/get-docker/.

  To allow pushing images to GCR, register gcloud as a Docker credential helper with gcloud auth configure-docker.

• Python requirements are managed by the root of the project's pyproject.toml and uv.

Configuration

Select a GCP project and zone to use.

./deployctl config set project $PROJECT
./deployctl config set zone $ZONE
./deployctl config set domain $DOMAIN

To see other available configuration options, run ./deployctl config list.

Table of contents

• Deploying the browser
• Elasticsearch
  • Connecting to Elasticsearch
  • Index aliases
  • Backups
  • Loading large datasets
• Update ClinVar variants
• Redis cache
• Logging