CLAM Installation Guide

Next, use the environment configuration file to create a conda environment:

conda env create -f env.yml

Activate the environment:

conda activate clam_latest

If you want to use CONCH as the pretrained encoder, install the package in the environment by running the following command:

pip install git+https://github.com/Mahmoodlab/CONCH.git

When done running experiments, to deactivate the environment:

conda deactivate clam_latest

Please report any issues in the public forum.

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