InterCellar-reproducibility

This repository contains supplementary data and code to reproduce the analyses and results presented in InterCellar's paper.

Folder structure

• cellchat_comparison/ - Contains code and data used for running CellChat on the melanoma dataset (Supplementary Fig. 5 and 6)
• functional_similarity/ - Code used to generate figures included in Supplementary Fig. 2
• input_data/ - Processing code and output data regarding the melanoma and COVID-19 datasets
• intercellar_walkthrough/ - Contains walkthrough of InterCellar's analysis on the melanoma and COVID-19 datasets, to reproduce results shown in the manuscript
• preprocessing/ - R script used by InterCellar with manual annotation of selected ligands and receptors