Gene expression profiles of 63 immune cell types

Bonnal RJP, Ranzani V, Arrigoni A, Curti S, Panzeri I, Gruarin P, Abrignani S, Rossetti G, Pagani M: De novo transcriptome profiling of highly purified human lymphocytes primary cells. Sci Data 2015, 2:150051.

Data source

Briefly, FASTQ files were downloaded, trimmed with Trimmomatic, aligned with subread to hg19, summarized using featureCount to Homo_sapiens.GRCh37.70.gtf.

Counts are in "data/counts.txt"

Annotated results are in the "results" folder

• mtx.expr.txt.gz - 62,069 genes x 63 samples matrix of read counts. Ensembl IDs as row names, Sample IDs as column names.

• mtx.txt.txt.gz - 65,231 genes x 14 annotations. First "Geneid" column contains Ensembl IDs. Note that one EnsemblID may have multiple annotations.

• mtx.annot.txt - 63 samples x 37 annotations. "Characteristics: cell type" and "Characteristics: phenotype" contain information about cell types.