paperAttachments.md

Overview

This page contain links to the files referred in original MiXCR paper:

Bolotin, Dmitriy A., Stanislav Poslavsky, Igor Mitrophanov, Mikhail Shugay, Ilgar Z. Mamedov, Ekaterina V. Putintseva, and Dmitriy M. Chudakov. "MiXCR: software for comprehensive adaptive immunity profiling." Nature methods 12, no. 5 (2015): 380-381.

Datasets used in the paper

• Full-length Antybody data (1.9 Gb): link
• Real TRB (1.5 Mb): link
• Real IGH (34 Mb): link
• Synthetic TRB (54 Mb): link
• Synthetic IGH (53 Mb): link

Code used in the paper

MiXCR-Test suite

Overview

MiXCR-Test suite is a set of utilities for

• Generation of synthetic repertoire data.
• Comparison of results of synthetic data analysis performed by MiXCR, MiTCR, IgBLAST, Decombinator or IMGT with expected values for CDR3 sequences and identified V, D, J, C genes.
• Comparison of results of real datasets analysis performed by MiXCR, MiTCR, IgBLAST, Decombinator or IMGT

Requiraments

• Java 8

Links

• Executable
• Documentation
• Source code