IMPACT Pipeline fork for the Innovation Lab

IMPACT-Pipeline: MSK-IMPACT assay data analysis framework to process data on LSF/SGE

:Author: Ronak H Shah <https://github.com/rhshah>, Donavan Cheng, Ahmet Zehir <https://github.com/ahmetz>, Aijazuddin Syed, Raghu Chandramohan <https://github.com/rghu>, Meera Prasad et.al :Contact: rons.shah@gmail.com :Source code: http://github.com/rhshah/IMPACT-Pipeline :Wiki: http://impact-pipeline.readthedocs.org/en/latest/index.html
:License: Apache License 2.0 <http://www.apache.org/licenses/LICENSE-2.0>

IMPACT-Pipeline is a Perl/Python/R command-line software toolkit to process data, call somatic aberrations (SNV,INDELS,SV,CNV) generated by NGS based MSK-IMPACT assay. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina.

.. image:: https://zenodo.org/badge/doi/10.5281/zenodo.32716.svg :target: http://dx.doi.org/10.5281/zenodo.32716

For Description/Usage/Help:

Please visit here: IMPACT-Pipeline Wiki <http://impact-pipeline.readthedocs.org/en/latest/index.html>_

Citation

If you use this software in a publication, please cite our paper

Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT): A Hybridization Capture-Based Next-Generation Sequencing Clinical Assay for Solid Tumor Molecular Oncology <http://www.sciencedirect.com/science/article/pii/S1525157815000458>_.