README.md
August 2, 2020 ยท View on GitHub
Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation
by Kazuya Nishimura, Junya Hayashida, Chenyang Wang, Dai Fei Elmer Ker, Ryoma Bise
Prerequisites
- python >= 3.6
- ubuntu 18.04
- CPU or GPU(NVIDIA Driver >= 430)
- matlab
Installation
Python setting
Conda user
conda env create -f=requirement.yml
conda activate pytorch
Docker user
docker build ./docker
sh run_docker.sh
Background estimation
matlab -nodesktop -nosplash -r 'Background_estimation.m
Cell detection
python predict.py
Backward Propagation
python backward_propagation.py
Forward Propagation
python forward_propagation.py
Association
python association_with_forward_propagation.py