Friday's bioinformatics optimizations

Just a repository to store sequence bioinformatics microbenchmark and script to produce graph.

Python requirement

• plotly

cano_iter

Run benchmark:

cargo bench -- cano_iter

Open target/criterion/iter_cano/report/index.html to see criterion report.

nuc2bit

Run benchmark:

cargo bench -- nuc2bit

Open target/criterion/nuc2bit/report/index.html to see criterion report.

Or you can generate altair plot:

python -m fbio nuc2bit -o nuc2bit.[html|png|svg|json] -s (subsample, default 50) -f {regex to filter out some dataset}...