Scripts for generating plots and figures for AlphaFold predictions of fold-switched conformations are driven by structure memorizationAugust 5, 2024 ยท View on GitHubMSA and Predictions generated using AlphaFold2, ColabFold, MSA clustering done using AF_Cluster TM-align was used to calculate TM-score, using python binding around the TM-align code for structural alignment of proteins check these links for more details: 1. https://github.com/google-deepmind/alphafold 2. https://github.com/sokrypton/ColabFold 3. https://github.com/HWaymentSteele/AF_Cluster/tree/main 4. https://zhanggroup.org/TM-align/ and https://pypi.org/project/tmtools/ Packages needed in python : Matplotlib, Seaborn, Pandas, Numpy, tmtools *Important* please change the paths in the python scripts before running them MSAs along with related log, output files generated from AF_Cluster, are in AFcluster_MSAs Code was run and tested on LINUX and MAC OSX machines.