schedule.md

September 13, 2017 · View on GitHub

Schedule

9.55	Opening Damjana Kastelic Scientific Training, CRG, Spain
10.00	Welcome & introduction Cedric Notredame Comparative Bioinformatics, CRG, Spain
10.10	Lessons learned and new challenges Paolo Di Tommaso Comparative Bioinformatics, CRG, Spain
10.30	Standardising Swedish genomics analyses using Nextflow Phil Ewels National Genomics Infrastructure, SciLifeLab, Sweden
11.00	Building Pipelines to Support African Bioinformatics Scott Hazelhurst University of the Witwatersrand, Johannesburg, South Africa
11.30	coffee break
12.00	Inside-Out: reproducible analysis of external data, inside containers with Nextflow Evan Floden Comparative Bioinformatics, CRG, Spain
12.30	Nextflow for chemistry - crossing the divide Tim Dudgeon Informatics Matters Ltd, UK
12.50	From zero to Nextflow @ CRG's Biocore Luca Cozzuto Bioinformatics Core Facility, CRG, Spain
13.10	Simplifying shotgun metagenomic analysis with Nextflow Alessia Visconti Department of Twins Research, King's College, UK
13.30	Lunch at Shoko restaurant.
14.30 18.30	Hackathon (CRG Bioinformatics room, 4th floor, 486) & course (Charles Darwin room)
20.00	Social dinner at La Fooditeca restaurant.

9.30	Computational workflows for omics analyses at the IARC Matthieu Foll International Agency for Research on Cancer (IARC), France
10.00	Medical Genetics at Oslo University Hospital Hugues Fontanelle Oslo University Hospital, Norway
10.30	Using Nextflow for Large Scale Benchmarking of Phylogenetic methods and tools Frédéric Lemoine Evolutionary Bioinformatics, Institut Pasteur, France
11.00	coffee break
11.30	Flexible bioinformatics workflows for NGS applications Johnny Wu Roche Sequencing, Pleasanton, USA
12.00	Standardizing life sciences datasets to improve studies reproducibility in the EOSC Jordi Rambla European Genome-Phenome Archive, CRG
12.20	Putting the Computation in Computational Biology Mike Smoot Synthetic Genomics, La Jolla, CA, USA
12.40	Unbounded By Economics Angel Pizarro AWS Research and Techical Computing, Amazon, USA
13.00	Lunch, CRG ground floor
14.00 18.00	Hackathon (Charles Darwin room)