gget tutorials
January 23, 2025 · View on GitHub
This repository contains immediatly executable Google Colab tutorials for gget. Also see the manual.
Available tutorials:
General tutorials:
🔗 General command-line tutorial covering basic gget commands
🔗 General JupyterLab tutorial covering basic gget commands
gget enrichr tutorials:
🔗 Perform a gene enrichment analysis with gget enrichr using a list of background genes
gget elm tutorials:
🔗 gget elm introduction
🔗 gget elm predicts the loss of a protein interaction motif involved in DNA repair in a carcinogenic BRCA2 mutation
🔗 Filter results returned by gget elm to identify disordered protein regions
gget alphafold tutorials:
🔗 Learn how to use gget alphafold in Google Colab
🔗 Check if a protein has crystal structure available on PDB. If not, create a de novo prediction and compare it to available crystal structures of related proteins.
scRNAseq tutorials:
🔗 Learn how gget can streamline comparative scRNA-seq analysis 1/2
🔗 Learn how gget can streamline comparative scRNA-seq analysis 2/2
