splitcode

splitcode is a tool that enables flexible and efficient parsing, interpreting and editing of sequencing reads according to a user’s specifications. Please visit the manual at https://splitcode.readthedocs.io/

Graphical User Interface (GUI)

The GUI for splitcode is at https://pachterlab.github.io/splitcode/

License

splitcode is distributed under the BSD-2 license.

Issues and Pull Requests

For help running splitcode or reporting bugs, please submit a GitHub issue.

Additionally, please submit a GitHub issue or a GitHub pull request for feature requests and suggested documentation improvements.

Citing splitcode

Sullivan DK, Pachter L. (2024). Flexible parsing, interpretation, and editing of technical sequences with splitcode. Bioinformatics. https://doi.org/10.1093/bioinformatics/btae331