Mass Spectrometry Data Backend for MassBank Files

April 12, 2023 · View on GitHub

Project Status: Active – The project has reached a stable, usable state and is being actively developed. R-CMD-check-bioc codecov license years in bioc Ranking by downloads build release build devel

The MsBackendMassbank package provides functionality to import and handle MS/MS spectrum data from Massbank files or to directly access a MassBank SQL database. The package defines the MsBackendMassbank and MsBackendMassbankSql backends which can be used to import and use MS2 spectrum data from mgf files respectively MySQL databases with the Spectra R package.

For more information see the package homepage.

Installation

The package can be installed with

install.packages("BiocManager")
BiocManager::install("MsBackendMassbank")

Contributions

Contributions are highly welcome and should follow the contribution guidelines. Also, please check the coding style guidelines in the RforMassSpectrometry vignette.