Trendy-Tutorials

Here are various tutorials for using the Trendy Bioconductor package for segmented regression analysis of expression dynamics for high-throughput ordered profiling experiments.

dynamicsWithTrendy-SingleCell.Rmd

-- a tutorial for using Trendy on single-cell RNA-seq data that has been computationally reordered.

The vignette for Trendy can be found here:

http://www.bioconductor.org/packages/release/bioc/vignettes/Trendy/inst/doc/Trendy_vignette.pdf

The current version of Trendy is available on Bioconductor: http://www.bioconductor.org/packages/release/bioc/html/Trendy.html

If you use Trendy in your research, please cite:

Bacher R, Leng N, Chu LF, Ni Z, Thomson JA, Kendziorski C, Stewart R. Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments. BMC Bioinformatics. 2018 Dec;19(1):380.